Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3767
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha...    45   7e-06
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    31   0.12 
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    25   4.7  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   6.2  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   6.2  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   6.2  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    25   8.2  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    25   8.2  

>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 44.8 bits (101), Expect = 7e-06
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
 Frame = +1

Query: 220 EKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR--XXX 393
           +K++ E +  D EDESL+K+K +L      G      +D R V++ KL+L V GR     
Sbjct: 32  KKSLNEYMKMDAEDESLQKWKASL---GITGTGYSPSNDRRTVVILKLSLLVDGRDPVDV 88

Query: 394 XXXXXXXXXXXKKQVFVIKEGVQYRIRIDFIV 489
                      +K+ F IKEG +++I + F V
Sbjct: 89  NMEDAASVEQIRKKGFTIKEGSEFKIGVKFRV 120


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 220  EKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVE 327
            EKT++E++   +++ SL  Y+E  L + QA  V +E
Sbjct: 1613 EKTLKEVIEDLEKNNSLHAYEEEALNEEQASLVFLE 1648


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 54  YLVFKCFFLFRLLILCKKSFVTCYKNEYVWR 146
           +  F C      L L  + ++ CY+   VWR
Sbjct: 80  FTAFLCLTFVAFLYLLDRLYINCYEYFIVWR 110


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 192 FFFLCILFGCMGYFRFSRHIRFYNKSRNSS 103
           F F+ IL GC+G      +++F +K++  S
Sbjct: 295 FIFISILCGCLGSVLIYLNMKFASKTKGFS 324


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 250 DQEDESLRKYKEALLGQAQAGAVIV 324
           D+  E+++ YK ALLG     +++V
Sbjct: 454 DRPQEAIKSYKRALLGSQTNSSILV 478


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 435 GIRDKGGCTIPNKDRFY 485
           GIRDKGG  I NK+  Y
Sbjct: 85  GIRDKGGVEISNKNDPY 101


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 255 LVSSKDLLYGLLWRWLI*GFDFFFLCILFGCMGYFRFS 142
           L+S KDL + L    L   +  F++C   G  GY + +
Sbjct: 14  LISCKDLTWDLSRSHLTTQYKSFYMCFDDGSFGYLQIA 51


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 228 GLLWRWLI*GFDFFFLCI 175
           GLLW WLI    FF +C+
Sbjct: 99  GLLWAWLI--AMFFLICV 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,105
Number of Sequences: 5004
Number of extensions: 35213
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)