Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3767
(491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0132 - 12166009-12166089,12166197-12166321,12166489-121667... 51 6e-07
02_05_0539 + 29846439-29846711,29846819-29846885,29847832-298480... 43 1e-04
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164... 43 2e-04
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631... 30 1.2
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426... 29 2.0
12_02_0279 - 16704284-16704925 28 4.7
09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335... 28 4.7
>06_02_0132 -
12166009-12166089,12166197-12166321,12166489-12166710,
12168194-12168260,12168424-12168741
Length = 270
Score = 50.8 bits (116), Expect = 6e-07
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +1
Query: 217 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRXX 390
P +I+E L D+EDESLR++KE LLG +V +EPD V + L + GR
Sbjct: 94 PRVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPD----VRITSLCILSPGRPD 149
Query: 391 XXXXXXXXXXXXKKQVFVIKEGVQYRIRIDFIV 489
K+ F +KEG YR++ F V
Sbjct: 150 VLLPLPVEPSNSKEPWFTLKEGSTYRLKFTFSV 182
>02_05_0539 +
29846439-29846711,29846819-29846885,29847832-29848050,
29848200-29848324,29848423-29848503
Length = 254
Score = 43.2 bits (97), Expect = 1e-04
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +1
Query: 217 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKLALCVVGRXX 390
P +I++ L D++DESLR++KE LLG +V +EPD V + LA+ GR
Sbjct: 79 PRVSIKDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPD----VKIMSLAILSPGR-P 133
Query: 391 XXXXXXXXXXXXKKQVFVIKEGVQYRIRIDFIV 489
K F +KEG Y+++ F V
Sbjct: 134 DIFLPLPVEPNAKGVWFTLKEGSLYKLKFTFSV 166
>01_06_1776 -
39815634-39815714,39815761-39815927,39816278-39816496,
39816614-39816680,39816771-39816932
Length = 231
Score = 42.7 bits (96), Expect = 2e-04
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +1
Query: 217 PEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGRXXXX 396
P+ ++E L D++DESLR++KE LLGQ + E +P VK L L ++
Sbjct: 42 PQVPLKEQLELDKDDESLRRWKEQLLGQVDT-EQLGETAEPE---VKVLNLTILSPDRPD 97
Query: 397 XXXXXXXXXXKK-QVFVIKEGVQYRIRIDFIV 489
+K F +K+G Y R FIV
Sbjct: 98 LVLPIPFVPDEKGYAFALKDGSTYSFRFSFIV 129
>04_03_0926 -
20861383-20862198,20862359-20862430,20862938-20863123,
20863214-20863304,20863698-20863852,20864501-20864579,
20866797-20867263
Length = 621
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 208 KPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEP 330
KPPP E + AAD E E+ RK +E A V P
Sbjct: 35 KPPPPPAEEGVAAADAEGEARRKQRELRAAAADKRLRAVAP 75
>08_02_1554 +
27841801-27842007,27842282-27842455,27842554-27842653,
27843273-27843725,27843936-27844469,27844500-27844580,
27844690-27844781,27844890-27844963,27845071-27845293,
27845429-27845522,27845607-27845761,27845899-27846129,
27846803-27847003,27847257-27847382,27847497-27847558,
27847775-27847892,27848040-27848324,27848475-27848513
Length = 1082
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 223 KTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVV 378
K + + AAD++ KYK LG + AV+V PD + + L L V
Sbjct: 197 KALLRVQAADRKYVHKFKYKGVELGVILSYAVLVHPDTAARASISNLQLVTV 248
>12_02_0279 - 16704284-16704925
Length = 213
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 388 HRAQPHTMLASSLSLCEDH 332
H+ P + L S+ SLCEDH
Sbjct: 162 HKKSPESCLISAASLCEDH 180
>09_02_0566 +
10732359-10732497,10733114-10733267,10733448-10733519,
10733701-10733769,10734430-10734501,10734590-10734661,
10734769-10734840,10734928-10734999,10735121-10735192,
10735293-10735364,10735435-10735506,10735826-10735897,
10736039-10736104,10736638-10736676,10736787-10736845,
10737166-10737545,10737629-10737824,10738012-10738179,
10738618-10738736,10738873-10739083,10739163-10739403,
10739830-10739980,10740469-10740828
Length = 999
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 348 HFARIIRFNNDSTCLGLSKQCFLVLPKGFILL 253
HFA I+ F NDST L K+ F V +G ++L
Sbjct: 493 HFAEIV-FTNDSTYCSLGKRRFNVFIQGRMVL 523
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,927,594
Number of Sequences: 37544
Number of extensions: 225588
Number of successful extensions: 607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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