Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3767
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein...    69   1e-12
U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP dissoci...    69   1e-12
Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U55366-5|AAA97983.1|  219|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein 1
           protein.
          Length = 191

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
 Frame = +1

Query: 205 YKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 384
           YK PP+K+I+E+L AD+EDESL+ YK  LLGQ   G VIV+  +P +VIV+ + L + G+
Sbjct: 16  YKQPPQKSIDELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGK 72

Query: 385 XXXXXXXXXXXXXXKKQVFV-IKEGVQYRIRIDFIV 489
                            + V IKEG  YR+   F V
Sbjct: 73  TAQSFDLSDPAKLVNSDLSVSIKEGSNYRLSFAFHV 108


>U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP
           dissociation inhibitor protein.
          Length = 191

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 40/96 (41%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
 Frame = +1

Query: 205 YKPPPEKTIEEILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKLALCVVGR 384
           YK PP+K+I+E+L AD+EDESL+ YK  LLGQ   G VIV+  +P +VIV+ + L + G+
Sbjct: 16  YKQPPQKSIDELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGK 72

Query: 385 XXXXXXXXXXXXXXKKQVFV-IKEGVQYRIRIDFIV 489
                            + V IKEG  YR+   F V
Sbjct: 73  TAQSFDLSDPAKLVNSDLSVSIKEGSNYRLSFAFHV 108


>Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical
           protein F46C5.7 protein.
          Length = 199

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 39  CKFYNYLVFKCFFLFRLLILCKKSFVTCYKNEY 137
           C F   + + CF +F L+I+    FV  Y   Y
Sbjct: 46  CAFAELIFYDCFVIFFLMIIASFVFVLLYLEFY 78


>U55366-5|AAA97983.1|  219|Caenorhabditis elegans Hypothetical
           protein F41F3.1 protein.
          Length = 219

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 183 LCILFGCMGYFRFSRHIRFYN 121
           LCI+FGC  Y R  R++R YN
Sbjct: 75  LCIVFGCRIYHR-RRYMRAYN 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,256,693
Number of Sequences: 27780
Number of extensions: 197935
Number of successful extensions: 561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)