Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3766
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    32   0.054
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce...    27   2.0  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   8.3  
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ...    25   8.3  

>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 32.3 bits (70), Expect = 0.054
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 309 RKIVSTYLSYFSRETWSKESSESLDP*AKLKTYLKFKWLSELIISTYSMPR*ERGLDCLK 488
           RK+  +YL   + E W+    E+L P  +   +++F    +     Y+ PR    LD L 
Sbjct: 73  RKLAFSYLEELAGEFWNSFGEEALQPGLRPYAFVQFDTFMQKSKRVYNTPRANDNLDKLN 132

Query: 489 T 491
           T
Sbjct: 133 T 133


>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 26  FLKKHRHCFLLLRRLQPQ*TFPKTKQHSFI 115
           FL    HC L  RRL PQ  F K ++++ I
Sbjct: 19  FLLVSIHCILYARRLYPQDLFIKARKYNTI 48


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 309 RKIVSTYLSYFSRETWSK 362
           ++++STYL YFS+   SK
Sbjct: 704 KQVLSTYLEYFSKNITSK 721


>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 33  KNIVIVFCSYEDFSHNRLFLKQNNT 107
           KN VI +C  ED++ N   L +N +
Sbjct: 212 KNKVIAYCQGEDYNGNTQVLSKNES 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,347
Number of Sequences: 5004
Number of extensions: 47253
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)