Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3766
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   3.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.2  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   6.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.0  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 194 SRGFYIIVKXYTGPYYFYVGRGRLR 268
           + G YII +   G  +F + RG++R
Sbjct: 242 NNGDYIIRQGARGDTFFIISRGQVR 266


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 249 WDEGDYDGI 275
           WDE DY GI
Sbjct: 90  WDEADYGGI 98


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/17 (35%), Positives = 15/17 (88%)
 Frame = +1

Query: 346 VKRGAKNPQNLLIRRQS 396
           +KRG  NP++++++R++
Sbjct: 147 LKRGIINPEDVMLKRRT 163


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 248 HKNNKGRYIXLLLYKNHVI 192
           + NN   Y   L YKN++I
Sbjct: 334 NNNNYNNYNKKLYYKNYII 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,841
Number of Sequences: 438
Number of extensions: 3504
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)