Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3763
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   1.5  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   1.9  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   2.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   4.4  

>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 493 LKSGNSLIVRWKTFPVSDKPNLHS 422
           LK+ N + V  +TFPV+D P  HS
Sbjct: 568 LKNINHMFVSGQTFPVTDVPGPHS 591


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 306 RRIEDAHYSYLETDESPEKLQQKKKLEDYIIEYLSLVP 419
           + IE+A Y Y+++ +S + L +    E+YI   + L P
Sbjct: 179 KEIEEAVYGYMQSIQSRDSLVRYVSNENYIDRLIELFP 216


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 390 SLQVSSSAAISLDFRQSQGSYSERPLFSSREPVAARAAPYHPFRQRTSS 244
           +L   +++  SL FRQS    S      +   +  +  P  PFR  +SS
Sbjct: 32  NLSTKTASKTSLTFRQSSSDESTSSYSGNHHNINIQHHPNRPFRTNSSS 80


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 318  DAHYSYLETDESPEKLQQKKKLEDYIIEYLSLVPHECKFGLSETGKVFQR--TINELPDF 491
            D  Y  L+ DE  E +    + ++ ++ +  L        +   GK  +R  T+NELPDF
Sbjct: 1367 DLTYGELQDDELNELIS---RTDEELVLFKKLDKERAATDIYGKGKPLERLLTVNELPDF 1423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,335
Number of Sequences: 5004
Number of extensions: 45695
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)