Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3763
(568 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68297-3|CAA92595.1| 536|Caenorhabditis elegans Hypothetical pr... 33 0.19
U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical pr... 30 1.0
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr... 30 1.0
U00056-2|AAN65309.2| 187|Caenorhabditis elegans Hypothetical pr... 29 1.8
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 28 4.1
U50311-5|AAX22295.1| 299|Caenorhabditis elegans Serpentine rece... 28 5.4
AC024755-7|AAO91688.1| 833|Caenorhabditis elegans Hypothetical ... 27 7.1
AC024755-6|AAF59639.1| 877|Caenorhabditis elegans Hypothetical ... 27 7.1
Z83115-7|CAJ85758.1| 318|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z83115-6|CAB05558.1| 384|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z81137-12|CAJ85772.1| 318|Caenorhabditis elegans Hypothetical p... 27 9.4
Z81137-11|CAB03472.1| 384|Caenorhabditis elegans Hypothetical p... 27 9.4
>Z68297-3|CAA92595.1| 536|Caenorhabditis elegans Hypothetical
protein F11A10.5 protein.
Length = 536
Score = 32.7 bits (71), Expect = 0.19
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 303 REPVAA-RAAPYHPFRQRTSS-PLHLYSSMQSVPGCQNLFRCTE 178
R P+A RAA Y+ FR+ T+S PL Y S Q+LF C E
Sbjct: 105 RNPMALFRAAEYNRFRKETNSEPLTYYDMNLSAQDHQSLFMCDE 148
>U70852-3|AAK29822.1| 836|Caenorhabditis elegans Hypothetical
protein F45E4.3b protein.
Length = 836
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 418 LMNVNSVYRRREKSSSGQSTSYLTLVLTAP--ASDGRLWQDTRPTYSLSL 561
L+ S+ RR + Q+ Y+T + P A+ ++Q++RPT SLS+
Sbjct: 62 LLKGGSLTRRHQHQQQHQAPVYITSSASRPPSAAGSNIFQESRPTSSLSM 111
>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical
protein F45E4.3a protein.
Length = 1231
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 418 LMNVNSVYRRREKSSSGQSTSYLTLVLTAP--ASDGRLWQDTRPTYSLSL 561
L+ S+ RR + Q+ Y+T + P A+ ++Q++RPT SLS+
Sbjct: 62 LLKGGSLTRRHQHQQQHQAPVYITSSASRPPSAAGSNIFQESRPTSSLSM 111
>U00056-2|AAN65309.2| 187|Caenorhabditis elegans Hypothetical
protein R05H11.2 protein.
Length = 187
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 273 YHPFRQRTSSPLHLYSSMQSVPG 205
YHP+RQR +S YS SV G
Sbjct: 54 YHPYRQRKNSTTSTYSDCSSVSG 76
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 444 PINRIYIHEALKTGTRLYSLQVSSSAAISLDFRQSQGSY 328
P Y E + TGT L +++ + + D R S GS+
Sbjct: 10 PAIGFYPQEEISTGTTLIAMEYNGGVVVGTDSRTSAGSF 48
>U50311-5|AAX22295.1| 299|Caenorhabditis elegans Serpentine
receptor, class sx protein34, isoform c protein.
Length = 299
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 410 RQVLDYIVFKFL-LLLQFLWTFVSLKVAIVSVLYSPPESR*PLA 282
R ++ Y ++ FL L+ F++T + L A + V Y+P PLA
Sbjct: 113 RSLVSYSLYTFLQLVFPFIYTSIFLLFAFLEVDYTPMTCAIPLA 156
>AC024755-7|AAO91688.1| 833|Caenorhabditis elegans Hypothetical
protein Y34B4A.4b protein.
Length = 833
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 423 HEALKTG-TRLYSLQVSSSAAISLDFRQSQGSYSERPLFSSREPVAARAA 277
HEA K + L++ QV + +L R+ +GSY E L S P ++ A
Sbjct: 305 HEASKLDKSNLFAKQVDTYQGAALIDRKGEGSYEESTLVRSALPQDSQVA 354
>AC024755-6|AAF59639.1| 877|Caenorhabditis elegans Hypothetical
protein Y34B4A.4a protein.
Length = 877
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 423 HEALKTG-TRLYSLQVSSSAAISLDFRQSQGSYSERPLFSSREPVAARAA 277
HEA K + L++ QV + +L R+ +GSY E L S P ++ A
Sbjct: 305 HEASKLDKSNLFAKQVDTYQGAALIDRKGEGSYEESTLVRSALPQDSQVA 354
>Z83115-7|CAJ85758.1| 318|Caenorhabditis elegans Hypothetical
protein K11D2.4b protein.
Length = 318
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 306 RRIEDAHYSYLETDESPEKLQQKKKLEDYIIEYLSLVPHEC 428
+R H ++ P+K+ + LE ++ E + PHEC
Sbjct: 69 KRSRSTHDGLMKCQYCPKKVNSEAALERHMSECRMIRPHEC 109
>Z83115-6|CAB05558.1| 384|Caenorhabditis elegans Hypothetical
protein K11D2.4a protein.
Length = 384
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 306 RRIEDAHYSYLETDESPEKLQQKKKLEDYIIEYLSLVPHEC 428
+R H ++ P+K+ + LE ++ E + PHEC
Sbjct: 135 KRSRSTHDGLMKCQYCPKKVNSEAALERHMSECRMIRPHEC 175
>Z81137-12|CAJ85772.1| 318|Caenorhabditis elegans Hypothetical
protein K11D2.4b protein.
Length = 318
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 306 RRIEDAHYSYLETDESPEKLQQKKKLEDYIIEYLSLVPHEC 428
+R H ++ P+K+ + LE ++ E + PHEC
Sbjct: 69 KRSRSTHDGLMKCQYCPKKVNSEAALERHMSECRMIRPHEC 109
>Z81137-11|CAB03472.1| 384|Caenorhabditis elegans Hypothetical
protein K11D2.4a protein.
Length = 384
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 306 RRIEDAHYSYLETDESPEKLQQKKKLEDYIIEYLSLVPHEC 428
+R H ++ P+K+ + LE ++ E + PHEC
Sbjct: 135 KRSRSTHDGLMKCQYCPKKVNSEAALERHMSECRMIRPHEC 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,785,659
Number of Sequences: 27780
Number of extensions: 258673
Number of successful extensions: 762
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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