Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3763
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.23 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.23 
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   3.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.5  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   8.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   8.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 430 NSVYRRREKSSSGQSTSYLTLVLTAPASDGRLWQDTRPTYSLSLGG 567
           N +YR    +  G++++ + L++TAP       + T P  S+ LGG
Sbjct: 305 NGIYRCSASNPGGEASAEIRLIVTAPLH----VEVTPPLLSVHLGG 346


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 430 NSVYRRREKSSSGQSTSYLTLVLTAPASDGRLWQDTRPTYSLSLGG 567
           N +YR    +  G++++ + L++TAP       + T P  S+ LGG
Sbjct: 305 NGIYRCSASNPGGEASAEIRLIVTAPLH----VEVTPPLLSVHLGG 346


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 234 LYSSMQSVPGCQNLFRCTECGADKNSSPKITIPQIAIFI*FL 109
           LY  M+ V G   +++  +CG  K         +IAI + FL
Sbjct: 60  LYFVMEYVNGGDLMYQIQQCGKFKEPVAVFYASEIAIGLFFL 101


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 478 SYLTLVLTAPASDGRLWQDTRPTYSLSL 561
           SYL  + T+P    RL+QD R  YS  L
Sbjct: 98  SYLHTI-TSPNKFVRLYQDGRVLYSSRL 124


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 312 IEDAHYSYLETDESPEK 362
           IED H  + +TD+ P K
Sbjct: 69  IEDYHGGFKKTDKHPPK 85


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 312 IEDAHYSYLETDESPEK 362
           IED H  + +TD+ P K
Sbjct: 85  IEDYHGGFKKTDKHPPK 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,165
Number of Sequences: 438
Number of extensions: 3614
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)