Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3762
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 32 0.096
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 30 0.39
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 29 0.68
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 2.7
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p... 26 4.8
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 26 4.8
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.3
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 26 6.3
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 26 6.3
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 8.3
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 8.3
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.3
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 25 8.3
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 8.3
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 31.9 bits (69), Expect = 0.096
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 234 FFAEMWFGIVFAVLVEIVPLSVRSTTVGVFLFVMNNIGGNLPIL 365
FF+++ +G+++A E+ P VR T VG+ +G P++
Sbjct: 472 FFSDIMYGVLYAYTPEVFPSKVRGTAVGLAASANRILGIFSPVI 515
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 29.9 bits (64), Expect = 0.39
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 419 IENHDGFSITDGLGNGVDQNWQISSDVVHNEEEDADGCGT-HGQ 291
+EN+DGFS D + D + +V ++EED+D T HGQ
Sbjct: 341 LENYDGFSDLDVEEDEDDVESSSNEEVSDSDEEDSDSKHTAHGQ 384
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 29.1 bits (62), Expect = 0.68
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 472 WTDRLRNRKKQRHPQDWTTELTATTSSG 555
WTDR R+RK+Q+ + +++ T +SG
Sbjct: 29 WTDRARDRKRQKRNSNESSKSTVKRNSG 56
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/78 (23%), Positives = 29/78 (37%)
Frame = -2
Query: 455 EEQDAADAIKSGIENHDGFSITDGLGNGVDQNWQISSDVVHNEEEDADGCGTHGQGHDLH 276
E + +G +N DG+ +G G VD N N EE+ DG +
Sbjct: 3 ENEVVGSPTTNGDKNEDGYPAENGEGTNVDDN---------NNEEEKDGIPLDNDNDEND 53
Query: 275 QYREHNAEPHLGKEICEG 222
E + +++ EG
Sbjct: 54 SSEESATDEEAERQVREG 71
>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -2
Query: 557 LPELVVAVSSVVQSCGCRCFFLFLNRS-VHQEHCQEEQDAADAIKSGIEN 411
L E +++ V Q+C C C N S VH ++ E + I S N
Sbjct: 93 LHERLISSRGVSQTCKCNCAVKLENESTVHLQNAAREDGTDEDINSNSVN 142
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 486 EKQEETTTPTGLDNRAYSHDELRQTRAL 569
++QEET PT L R S DE+ AL
Sbjct: 476 KEQEETDEPTSLSKRKRSIDEILPNDAL 503
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 614 FNF-YSRTAIRLLFCVMVTQCLESDVLVKYTYSTI 715
+N+ +S + LL CV C E D+ ++Y YS +
Sbjct: 591 YNYTFSSALVVLLHCV-TEPCEEDDIAMQYAYSAL 624
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 325 RKTPTVVERTDKGTISTSTANTMPNHIS 242
+KTPT V+ T STS + P IS
Sbjct: 870 QKTPTAVDNTSTSRGSTSVKTSKPKKIS 897
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 164 SYQLGQREHKHSGP 123
SY+L +REHKH P
Sbjct: 341 SYELTKREHKHGSP 354
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 276 VEIVPLSVRSTTVGVFLFVMNNIGGNLPILVDPVSKAIG 392
+ +V L VG+ VM+ GG LP + S A G
Sbjct: 419 IAVVALCNSLNAVGIAESVMDPFGGKLPTTYEETSSATG 457
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 472 WTDRLRNRKKQRHPQDWTTELTATTSSGKRE 564
++DR N K + +WTT++T ++ G E
Sbjct: 294 YSDRSLNSKTPKSQDNWTTQVTPSSLLGVSE 324
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 413 FLCRILWHQQHPVLLDNVPDG 475
+L I+WH H +++ +PDG
Sbjct: 206 YLQSIVWHLYHSMIISLLPDG 226
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 458 QEEQDAADAIKSGIENHDGFSITDGLGNGVDQNWQISSDVVHNEEEDA 315
+EE++ D G + DG DG G+ ++ +I D+ EEE A
Sbjct: 198 EEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEEI--DIEEEEEESA 243
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 452 EQDAADAIKSGIENHDGFSITDGLGNGVDQNWQISS 345
E D + + S +HDG ++ GLGNG+ + + S
Sbjct: 217 ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,221,842
Number of Sequences: 5004
Number of extensions: 71252
Number of successful extensions: 221
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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