Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3762
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 30 2.2
03_05_0727 - 27170082-27170336,27170398-27170793,27171009-27171014 30 2.2
09_03_0154 + 12831120-12831222,12831761-12831858,12832019-128321... 29 2.8
04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189 29 3.8
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 29 3.8
03_05_0209 + 22014556-22015308 29 5.0
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 28 6.6
07_03_1794 - 29580767-29584189 28 6.6
06_02_0294 - 13870253-13870288,13870458-13870527,13871156-13871418 28 6.6
01_03_0126 + 12741397-12743022 28 6.6
12_02_0089 + 13488932-13489915 28 8.7
08_01_0115 - 929926-930012,930093-930242,930336-930424,930696-93... 28 8.7
03_06_0756 - 36032432-36033871 28 8.7
03_03_0265 - 16000085-16000319,16001730-16001854,16004323-16005492 28 8.7
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 252 FGIVFAVLVEIVPLSVRSTTVGVFLFVMNNIGGNL-PILVDPVSKAIGYREAIMIF 416
F IV+ EI P SVR+T +GV V IGG L P++ + + AI++F
Sbjct: 441 FTIVYIYAPEIYPTSVRTTGIGVASSV-GRIGGILCPLVAVALVHSCQQTTAILLF 495
>03_05_0727 - 27170082-27170336,27170398-27170793,27171009-27171014
Length = 218
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 236 LCRDVVRHCVRGTGGDRALVRAFHNRRRLP 325
+C + V CV G GGD + +RA+ R P
Sbjct: 144 VCTEAVGECVGGDGGDDSRLRAYAERYHCP 173
>09_03_0154 +
12831120-12831222,12831761-12831858,12832019-12832195,
12832307-12832407,12832503-12832578,12832665-12832724,
12832810-12832994,12833078-12833174,12833279-12833365,
12833453-12833511,12833617-12833708,12833821-12833898,
12834000-12834160,12834267-12834485
Length = 530
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 111 KMGIRSRVLVLALSQLIATLPSFGSVVFGPLWAMITLAFAYFFA 242
++G+ +L++A SQ + + FG +FG + T++ + +A
Sbjct: 191 EIGLPELILLVAFSQYLPQVLHFGKPIFGRFGVLFTVSIVWLYA 234
>04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189
Length = 470
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -2
Query: 485 NRSVHQEHCQEEQDAADAIKSGIENHDGFSITDGLGNG--VDQNWQISSDVVHNEEEDAD 312
N +++Q H E Q D K +++D ++ NG + N Q +S +E+ED D
Sbjct: 291 NAAINQLH-DELQAYLDTKKEHGQSNDQMTLLRASENGREIADNIQKNSGECDDEDEDDD 349
Query: 311 GCGTHGQGHDLH 276
+ +G D+H
Sbjct: 350 DDDSASEGSDMH 361
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +3
Query: 252 FGIVFAVLVEIVPLSVRSTTVGVFLFVMNNIGGNL-PILVDPVSKAIGYREAIMIFYAGF 428
F ++ E+ P S RST VG+ + IGG + P++ + ++ EAI++F
Sbjct: 597 FTVLCLYAPEVYPTSARSTGVGI-ATAIGRIGGVVCPLVAVGMLRSCHQMEAILVFELVL 655
Query: 429 Y--GISSILF 452
+ G++ LF
Sbjct: 656 FLAGVACFLF 665
>03_05_0209 + 22014556-22015308
Length = 250
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = -2
Query: 320 DADGCGTHGQGHDLHQYREH-NAEPHLGKEICEGQSDHSPKRAEDDGSE 177
D CG G G Q+ EP E C +P R DD SE
Sbjct: 100 DFTACGHTGVGDKQEQHHHQVGVEPSSATESCVPDHSEAPYRDNDDASE 148
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 28.3 bits (60), Expect = 6.6
Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 1/119 (0%)
Frame = -2
Query: 467 EHCQEEQDAADAIKSGIENHDGFSITDGLGNGVDQNWQISSDVVHNEEEDADGCGTHGQG 288
E C ++ + + I +E D D G+ + ++ + H E++D D QG
Sbjct: 225 EKCMDQVEGTNRISDNVETKDMLPYVDKDGHALSRDGRNKEARHHREKDDGD------QG 278
Query: 287 HDLHQYREHNAEPHLGKEICEGQSDHSPKRAEDDGSERR*GSYQLGQRE-HKHSGPNPH 114
H E N K + D+ R D E G R+ H PN +
Sbjct: 279 HS-DSDNERNISMK-EKIRVDAHGDYKSYRGRDRNRELEGSKEHWGSRQRHDSKEPNDY 335
>07_03_1794 - 29580767-29584189
Length = 1140
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -2
Query: 425 SGIENHDGFSITDGLG---NGVDQNWQISSDVVHNEEED 318
SG+E HD TDG+ NG ++N+Q + ++ + D
Sbjct: 443 SGVEGHDSLDGTDGIDDCKNGNEENFQSENRLIQEDLMD 481
>06_02_0294 - 13870253-13870288,13870458-13870527,13871156-13871418
Length = 122
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 437 DAIKSGIENHDGFSITDGLGNGVDQNWQI 351
DAI+ G++ G SI LG G D W I
Sbjct: 5 DAIRGGVKPRVGLSIVQLLGCGCDIQWTI 33
>01_03_0126 + 12741397-12743022
Length = 541
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 123 RSRVLVLALSQLIATLPSFGSVVFGPLWAMITLAFAYFFAEMW-FGIVFAVLVEIVPLSV 299
R V+ L + + +L + V P A + A FFA + ++ +E+ P SV
Sbjct: 393 RGSVVALTTASGLCSLAACVPAVVLPDGARMAAEVASFFASCTAYDMMLMYTIELFPTSV 452
Query: 300 RSTTVGVFLFVMNNIGGNLPILV 368
R++ VG+ + G P+LV
Sbjct: 453 RNSAVGLVRQAVALGGVVAPVLV 475
>12_02_0089 + 13488932-13489915
Length = 327
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 220 WPSHISLPRCGSALCSR 270
WP LPR SALCSR
Sbjct: 234 WPGFARLPRAESALCSR 250
>08_01_0115 -
929926-930012,930093-930242,930336-930424,930696-930816,
930918-931020,931685-931763,933879-934038
Length = 262
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 306 TTVGVFLFVMNNIGGNLPILVDPVSKAIGYREAIMIF 416
TTV VF V+ + G +LPI++ S A+ IMI+
Sbjct: 141 TTVDVFALVLESGGSDLPIIISCASLALA-DAGIMIY 176
>03_06_0756 - 36032432-36033871
Length = 479
Score = 27.9 bits (59), Expect = 8.7
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +3
Query: 312 VGVFLFVMNNIGGNLPILVDPVSKA-IGYREAIMIFYAGFYGISSILFFLTMFL-MDGPV 485
VG++ V LP+ V KA +G + ++ F G +S+ LT MD P
Sbjct: 397 VGMYAVVAGFYVLALPLGVALAFKARLGIQGLLLGFLVG--AAASLAVLLTFIARMDWPA 454
Query: 486 EKQEETTTPTGLDNRAYSHDELRQ 557
E Q+ T T + + HDE+ Q
Sbjct: 455 EAQKARTRTTATVAQFHQHDEVVQ 478
>03_03_0265 - 16000085-16000319,16001730-16001854,16004323-16005492
Length = 509
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 134 ACARVVPADSYLTFVRIRRLRPALGYDHSGLRIFLCR 244
ACARV D + + R RP L +D +G CR
Sbjct: 62 ACARVPSRDPWFLMLSGARPRPPLAFDAAGRSWIPCR 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,772,916
Number of Sequences: 37544
Number of extensions: 512019
Number of successful extensions: 1612
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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