Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3762
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 34 0.12
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 34 0.12
U21733-1|AAB38384.1| 869|Caenorhabditis elegans UNC-44 protein. 34 0.12
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 33 0.27
U50135-3|AAA93454.1| 329|Caenorhabditis elegans Squashed vulva ... 31 0.84
Z81595-1|CAB04753.2| 337|Caenorhabditis elegans Hypothetical pr... 29 3.4
U53154-6|AAC25855.3| 357|Caenorhabditis elegans Nuclear hormone... 29 3.4
AY204192-1|AAO39196.1| 357|Caenorhabditis elegans nuclear recep... 29 3.4
AY204191-1|AAO39195.1| 357|Caenorhabditis elegans nuclear recep... 29 3.4
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81101-2|CAC42330.1| 199|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81101-1|CAB03197.1| 210|Caenorhabditis elegans Hypothetical pr... 29 4.5
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 29 4.5
AF099927-3|AAZ32795.1| 893|Caenorhabditis elegans Hypothetical ... 29 4.5
AF099927-1|AAZ32794.1| 955|Caenorhabditis elegans Hypothetical ... 29 4.5
Z69384-3|CAA93418.1| 475|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z22181-9|CAA80186.1| 453|Caenorhabditis elegans Hypothetical pr... 28 7.8
U41264-9|AAA82429.3| 240|Caenorhabditis elegans Hypothetical pr... 28 7.8
AL023828-27|CAI46622.1| 308|Caenorhabditis elegans Hypothetical... 28 7.8
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -2
Query: 470 QEHCQEEQDAADAIKSGIENHDGFSITDGLGNGVDQNWQISS-DVVHNEEEDADGC---G 303
QEH Q++Q+ A+A GF + D + +QN Q+ + V E ED+D G
Sbjct: 6587 QEHQQKDQEQAEAEDQREAEDLGFEVYD--ADTEEQNQQLEELETVEEEPEDSDSLNEGG 6644
Query: 302 THGQGH 285
H GH
Sbjct: 6645 NHSSGH 6650
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -2
Query: 470 QEHCQEEQDAADAIKSGIENHDGFSITDGLGNGVDQNWQISS-DVVHNEEEDADGC---G 303
QEH Q++Q+ A+A GF + D + +QN Q+ + V E ED+D G
Sbjct: 6587 QEHQQKDQEQAEAEDQREAEDLGFEVYD--ADTEEQNQQLEELETVEEEPEDSDSLNEGG 6644
Query: 302 THGQGH 285
H GH
Sbjct: 6645 NHSSGH 6650
>U21733-1|AAB38384.1| 869|Caenorhabditis elegans UNC-44 protein.
Length = 869
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -2
Query: 470 QEHCQEEQDAADAIKSGIENHDGFSITDGLGNGVDQNWQISS-DVVHNEEEDADGC---G 303
QEH Q++Q+ A+A GF + D + +QN Q+ + V E ED+D G
Sbjct: 462 QEHQQKDQEQAEAEDQREAEDLGFEVYD--ADTEEQNQQLEELETVEEEPEDSDSLNEGG 519
Query: 302 THGQGH 285
H GH
Sbjct: 520 NHSSGH 525
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 32.7 bits (71), Expect = 0.27
Identities = 29/115 (25%), Positives = 40/115 (34%)
Frame = -2
Query: 473 HQEHCQEEQDAADAIKSGIENHDGFSITDGLGNGVDQNWQISSDVVHNEEEDADGCGTHG 294
H EH + + A K G E+H+ + D +GV H+ GTH
Sbjct: 370 HHEHHEHKDGAHHEHKEG-EHHEHAAHHDE--HGVHHRHHGEHHGTHHSPAHHGEHGTHH 426
Query: 293 QGHDLHQYREHNAEPHLGKEICEGQSDHSPKRAEDDGSERR*GSYQLGQREHKHS 129
H H H+A H G G HSP G ++ EH H+
Sbjct: 427 GHHGEH----HHAPAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHHA 477
>U50135-3|AAA93454.1| 329|Caenorhabditis elegans Squashed vulva
protein 7 protein.
Length = 329
Score = 31.1 bits (67), Expect = 0.84
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = +3
Query: 132 VLVLALSQLIATLPSFGSVVFGPLWAMITLAFAYFFAEMWFGIVFAVLVEIVPLSVRSTT 311
VL++ +++++ T F S +F + M+ FFA+M+ + F L +P +
Sbjct: 24 VLIVFVNKILLTNYKFPSFLFVGVGQMMATILILFFAKMFRIVQFPSLDSSIPRKIMPLP 83
Query: 312 VGVFLFVMNNIGG----NLPI 362
+ F +++ +GG NLP+
Sbjct: 84 LLYFFNLISGLGGTQMINLPM 104
>Z81595-1|CAB04753.2| 337|Caenorhabditis elegans Hypothetical
protein T22H2.1 protein.
Length = 337
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -3
Query: 706 VCIFYKHITFQALGYHYTKQ*PYCRSTIKIEGVALYDYNL 587
+ ++Y +T+Q + + P C S + +G +YDY+L
Sbjct: 150 ISMWYSKLTYQQKFEYVRQNFPQCLSWLAFDGFEVYDYHL 189
>U53154-6|AAC25855.3| 357|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 107 protein.
Length = 357
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 241 AKKYAKARVIIAQSGPKTTDPNEGKVAISWDNASTSTRDLIPIFATY 101
A KY ++ + SG T NE V DN++ S D+I +F Y
Sbjct: 196 ATKYNDSKNFYSPSGAMCTSINEFYVNTVRDNSAISQEDIIRVFEPY 242
>AY204192-1|AAO39196.1| 357|Caenorhabditis elegans nuclear receptor
NHR-107 protein.
Length = 357
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 241 AKKYAKARVIIAQSGPKTTDPNEGKVAISWDNASTSTRDLIPIFATY 101
A KY ++ + SG T NE V DN++ S D+I +F Y
Sbjct: 196 ATKYNDSKNFYSPSGAMCTSINEFYVNTVRDNSAISQEDIIRVFEPY 242
>AY204191-1|AAO39195.1| 357|Caenorhabditis elegans nuclear receptor
NHR-107 protein.
Length = 357
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -3
Query: 241 AKKYAKARVIIAQSGPKTTDPNEGKVAISWDNASTSTRDLIPIFATY 101
A KY ++ + SG T NE V DN++ S D+I +F Y
Sbjct: 196 ATKYNDSKNFYSPSGAMCTSINEFYVNTVRDNSAISQEDIIRVFEPY 242
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -3
Query: 391 PMALETGSTRIGRFPPMLFITKRKTPTVVERTDKGTISTSTANTMPNHISAK 236
P T ST + + T+ TPT T K T +T T P SAK
Sbjct: 319 PTTTTTASTTTFKTTTITTTTQTTTPTTTATTTKPTTTTPTTTRTPVDCSAK 370
>Z81101-2|CAC42330.1| 199|Caenorhabditis elegans Hypothetical
protein K09G1.1b protein.
Length = 199
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/26 (34%), Positives = 21/26 (80%)
Frame = +3
Query: 396 REAIMIFYAGFYGISSILFFLTMFLM 473
RE +++ FYG++++L+F++++LM
Sbjct: 117 REGLIVVELIFYGVNTLLYFISIWLM 142
>Z81101-1|CAB03197.1| 210|Caenorhabditis elegans Hypothetical
protein K09G1.1a protein.
Length = 210
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/26 (34%), Positives = 21/26 (80%)
Frame = +3
Query: 396 REAIMIFYAGFYGISSILFFLTMFLM 473
RE +++ FYG++++L+F++++LM
Sbjct: 128 REGLIVVELIFYGVNTLLYFISIWLM 153
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -2
Query: 527 VVQSCGCRCFFLFLNRSVHQEHCQEEQDAADAIKSGIENHDG 402
+ C CR +L L + + C Q + DAI G N G
Sbjct: 1585 IQDQCQCRSGYLVLQETCISDRCNCVQPSVDAISGGCMNQCG 1626
>AF099927-3|AAZ32795.1| 893|Caenorhabditis elegans Hypothetical
protein T04C4.1b protein.
Length = 893
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 523 TTELTATTSSGKREHYLTHL 582
TTE+T+TT++ R H+L HL
Sbjct: 650 TTEITSTTTTTPRHHHLHHL 669
>AF099927-1|AAZ32794.1| 955|Caenorhabditis elegans Hypothetical
protein T04C4.1a protein.
Length = 955
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 523 TTELTATTSSGKREHYLTHL 582
TTE+T+TT++ R H+L HL
Sbjct: 711 TTEITSTTTTTPRHHHLHHL 730
>Z69384-3|CAA93418.1| 475|Caenorhabditis elegans Hypothetical
protein T11G6.3 protein.
Length = 475
Score = 27.9 bits (59), Expect = 7.8
Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Frame = +3
Query: 129 RVLVLALSQLIATLPSFGSVV------FGPLWAMITLAFAYFFAEMWFGIVFAVLVEIVP 290
R+L L ++ ++ +FG V PL+A++ ++ +F + W + ++
Sbjct: 107 RILALGMALSAISVFTFGFVTEVSHFYSAPLYAVLWISNGFFQSVGW-PLEVCIMGNWFG 165
Query: 291 LSVRSTTVGVFLFVMNNIGGNLPILVDPVSKAIGYREAIMIFYAGFYGISSILFF 455
+ R +G + ++G L L+ + IGY+ +I + S I+FF
Sbjct: 166 KTARGAVIGAWS-TNASVGNILATLIASWTVNIGYQYPFLIISTALFTYSIIIFF 219
>Z22181-9|CAA80186.1| 453|Caenorhabditis elegans Hypothetical
protein ZK632.11 protein.
Length = 453
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 20 RSRLVAVRCHGRHWIRWCCRRRDY--IRQIRSENGD 121
R ++ C G H +R C +R+D+ I + + E+GD
Sbjct: 106 RKKISCFNCDGEHNLRDCTQRKDFRRISRKKRESGD 141
>U41264-9|AAA82429.3| 240|Caenorhabditis elegans Hypothetical
protein F10E7.2 protein.
Length = 240
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 563 SRLPELVVAVSSVVQSCGCRCFFLFLNRSV 474
SR P + V VS+V + C C L L RS+
Sbjct: 191 SRSPSIFVPVSTVFLTTYCLCLTLILKRSI 220
>AL023828-27|CAI46622.1| 308|Caenorhabditis elegans Hypothetical
protein Y17G7B.23 protein.
Length = 308
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 551 ELVVAVSSVVQSC-GCRCFFLFLNRSVHQEHCQEEQDAADAIKSGI 417
EL++ V++ + GC F++ + H E C + D IKSGI
Sbjct: 63 ELMIPVNNKLAFVRGCHADFVWDEFASHNESCHQYVDDVTVIKSGI 108
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,114,530
Number of Sequences: 27780
Number of extensions: 418476
Number of successful extensions: 1421
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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