Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3760
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    29   0.43 
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   3.0  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   6.9  

>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 236 QRQDFRSKRTET*S*SID*ASCLSTSNPSGSSTGKP*KRTGRTHKLTCRGLTDS*IPS-C 412
           Q  DF SK+ +T S + D  S    + P  S+T    +   + HKLT  G+T   I   C
Sbjct: 179 QALDFYSKQLDTTSETKDSFSFCKETLPRSSTTSYSIRDADKHHKLTTSGVTKMNITERC 238

Query: 413 PVKTLL 430
             KT +
Sbjct: 239 KPKTTI 244


>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 413 PVKTLLPPKQTQTQCRQYRAAGHRTPHRPV 502
           P   +  PK+ Q  C  Y    +RTP  PV
Sbjct: 63  PPIAISDPKEAQNHCSSYYYIKYRTPDSPV 92


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 314 NPSGSSTGKP*KRTGRTHKLTCR 382
           NP+   T KP KR  +T  LTCR
Sbjct: 18  NPNVEPTPKPTKRRTKTGCLTCR 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,463
Number of Sequences: 5004
Number of extensions: 44448
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)