Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3760
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    26   0.35 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.61 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.61 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.3  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +1

Query: 163 PIGFPDTPNRITVAVGDRFGDDDSTTPRLPIEA--NGDLELIDRLSKLPVDKQPFWFINW 336
           P   PD    +   V +RFGDD  T  +LP++A    DL +  +L +    +QPF     
Sbjct: 34  PDYLPDRYRSVATQVFNRFGDD--TESKLPVKAITLPDLSIPMQLGR----RQPFSLF-- 85

Query: 337 QALEAHRK 360
             + AHRK
Sbjct: 86  --IPAHRK 91


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 226 DDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPN 390
           D+S T    I   G + L D++   P+D+ P W  N+     + K+   +  RPN
Sbjct: 628 DESNTKSYEIPLYGKMTLDDKVFGFPLDR-PMWAWNFTIPNMYFKDVFIY-NRPN 680


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 226 DDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPN 390
           D+S T    I   G + L D++   P+D+ P W  N+     + K+   +  RPN
Sbjct: 628 DESNTKSYEIPLYGKMTLDDKVFGFPLDR-PMWAWNFTIPNMYFKDVFIY-NRPN 680


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 497 PVARFKATLMQL*ETDLILTTPMLNQRAPLQTNPARKVWSR 619
           P  R +A L    + D+I +TP+ N    L  +P ++ W R
Sbjct: 204 PTERLEA-LCWTQDEDIICSTPIGNLSHALLKDPVKEFWER 243


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 497 PVARFKATLMQL*ETDLILTTPMLNQRAPLQTNPARKVWSR 619
           P  R +A L    + D+I +TP+ N    L  +P ++ W R
Sbjct: 151 PTERLEA-LCWTQDEDVICSTPIGNLSHALLKDPVKEFWER 190


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 343 LEAHRKNPQTHVQRP 387
           L  H ++PQTHV  P
Sbjct: 325 LNVHFRSPQTHVMAP 339


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 212 SPTATVILLGVSGNPIGLDP 153
           +P ATV L+GV GN   L P
Sbjct: 296 TPYATVALIGVYGNRELLTP 315


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 212 SPTATVILLGVSGNPIGLDP 153
           +P ATV L+GV GN   L P
Sbjct: 296 TPYATVALIGVYGNRELLTP 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,211
Number of Sequences: 438
Number of extensions: 2955
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)