Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3758
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    29   0.24 
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    25   4.0  
SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit ...    25   4.0  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   4.0  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   5.2  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    25   6.9  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    24   9.1  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    24   9.1  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    24   9.1  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 172  DQSLSFIELRDSIVLQWKCY*EKSSSQNYFALT*LLDNTKSILKYID 312
            D     IEL + IVLQ   + E ++ QN   LT +  +   +++YID
Sbjct: 995  DLPSQLIELLEKIVLQPSSFSENANLQNLLFLTAIKADKSRVMEYID 1041


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 291 IDIKIYRLRNPLTHGPWFCMEYLKTK 368
           I ++I   +N L HGPW C++ + ++
Sbjct: 138 IRLQIQTGKNVLYHGPWDCIKKISSQ 163


>SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit
           Arc34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 161 HYNIKANC*YMHSRMTIELMHYYIKLNLA 75
           H++IKA+  YMH RM   +  +   LN A
Sbjct: 270 HFHIKASKAYMHQRMRKRVADFQKVLNRA 298


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 21  IVNVVHRLFIDAMKKTDTCQVEFYVI 98
           +VN+  RLF D  +K  T  VEFY++
Sbjct: 144 LVNIF-RLFFDLARKGTTKNVEFYML 168


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 134 YMHSRMTIELMHYYIKLNLACIRFLHCIYK*SMYNIYNTNKLL 6
           Y HS  T+ L  YY  L+     F   IYK + Y   N  + L
Sbjct: 203 YFHSDNTVLLNEYYKSLSKLKNNFRGIIYKTTPYGSCNDTESL 245


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 374 LIFSFQIFHTKPWT 333
           ++ SFQ+  TKPWT
Sbjct: 104 IVLSFQVKPTKPWT 117


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 294 DIKIYRLRNPLTHGPWFCME 353
           D+ IYR +  +  G WFC E
Sbjct: 7   DLYIYRKQYGVNLGAWFCAE 26


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 5   IIIYLYCKCCTSIIYRCNEENGYMPS*VLCNSA*VRLSFLNAYTSSLL*YCN 160
           I+ +L+   CTS ++RC  +   +   VL ++  V     ++YT   L  C+
Sbjct: 244 IVFFLHAPFCTSEVFRCLSKRAEILKGVLASN--VIAMQTDSYTRHFLSTCS 293


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 312 LRNPLTHGPWFCMEYLKTKNQ*ARLGV*D 398
           +RNP THG  FC+ +        ++GV D
Sbjct: 97  VRNPFTHG-LFCVVFYHQNKSYLKMGVTD 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,894,327
Number of Sequences: 5004
Number of extensions: 37672
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)