Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3758
         (444 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065881-1|BAC06099.1|  311|Homo sapiens seven transmembrane hel...    29   5.5  
AB065879-1|BAC06097.1|  311|Homo sapiens seven transmembrane hel...    29   5.5  
AB065499-1|BAC05749.1|  269|Homo sapiens seven transmembrane hel...    29   9.6  

>AB065881-1|BAC06099.1|  311|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 311

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 334 VHGFVWNI*KLKINKLVSEFETKLLPHLHPVLY 432
           ++ ++W   +L ++K +S F T   P L+P++Y
Sbjct: 255 IYFYIWPFSRLPVDKFLSVFYTVCTPLLNPIIY 287


>AB065879-1|BAC06097.1|  311|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 311

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 334 VHGFVWNI*KLKINKLVSEFETKLLPHLHPVLY 432
           ++ ++W   +L ++K +S F T   P L+P++Y
Sbjct: 255 IYFYIWPFSRLPVDKFLSVFYTVCTPLLNPIIY 287


>AB065499-1|BAC05749.1|  269|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +1

Query: 364 LKINKLVSEFETKLLPHLHPVLY 432
           L +NK+VS F T ++P L+P++Y
Sbjct: 224 LDLNKVVSVFYTAVIPMLNPLIY 246


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,537,809
Number of Sequences: 237096
Number of extensions: 1112619
Number of successful extensions: 1406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3659526016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)