Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3758
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68302-2|CAA92631.1|  630|Caenorhabditis elegans Hypothetical pr...    29   1.1  
L23647-3|AAK67242.2|  183|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U40409-5|AAL27247.1|  589|Caenorhabditis elegans Activator of g ...    28   2.7  
U40409-4|AAA81387.1|  579|Caenorhabditis elegans Activator of g ...    28   2.7  
U64851-2|AAC47987.1|  613|Caenorhabditis elegans Hypothetical pr...    27   4.6  

>Z68302-2|CAA92631.1|  630|Caenorhabditis elegans Hypothetical
           protein ZK792.5 protein.
          Length = 630

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 414 VWEQFCLKLRDELIDF*FSNIPYKTM 337
           +W +FC K  DEL D  FSN P + M
Sbjct: 375 LWIEFCSKNVDELTDNRFSNFPLQKM 400


>L23647-3|AAK67242.2|  183|Caenorhabditis elegans Hypothetical
           protein ZC262.8 protein.
          Length = 183

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 294 DIKIYRLRNPLTHGPWFCMEYLKTKNQ 374
           D+ +Y+L     HG WF ++   TKNQ
Sbjct: 149 DMSMYQLETKQRHGTWFYIKRYPTKNQ 175


>U40409-5|AAL27247.1|  589|Caenorhabditis elegans Activator of g
           protein signallingprotein 3, isoform b protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -2

Query: 227 HFH*STILSRSSINDSD*SLFTHYNIKANC*YMHSRMTIELMHYYIKLNLA 75
           HFH   +       D       H NI ANC  + S M + + HY +  NLA
Sbjct: 216 HFHKLRLELSQQYGDRASMRRAHANI-ANCHALKSNMPLAIQHYKLAYNLA 265


>U40409-4|AAA81387.1|  579|Caenorhabditis elegans Activator of g
           protein signallingprotein 3, isoform a protein.
          Length = 579

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -2

Query: 227 HFH*STILSRSSINDSD*SLFTHYNIKANC*YMHSRMTIELMHYYIKLNLA 75
           HFH   +       D       H NI ANC  + S M + + HY +  NLA
Sbjct: 206 HFHKLRLELSQQYGDRASMRRAHANI-ANCHALKSNMPLAIQHYKLAYNLA 255


>U64851-2|AAC47987.1|  613|Caenorhabditis elegans Hypothetical
           protein F28A12.1 protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 5   IIIYLYCKCCTSII-YRCNEENGYMPS*VLCNSA*VRLSFLNAYTSS 142
           +I Y Y K   S I +  NE   Y PS  +CN   V+ SF+    SS
Sbjct: 80  LIQYFYSKPTLSQINFITNEGAVYFPSVTVCNLNPVKTSFIKKLNSS 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,199,805
Number of Sequences: 27780
Number of extensions: 203584
Number of successful extensions: 367
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)