Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3758
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    25   0.37 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   4.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.0  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 25.0 bits (52), Expect = 0.37
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 364 LKINKLVSEFETKLLPHLHPVL 429
           L +NK+VS F T ++P L+P +
Sbjct: 147 LDLNKVVSVFYTAVIPMLNPFI 168


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 132 ILAVCFNIVMCK**SITVIYRTPRQYCASMEML 230
           +L VC  I      S+TV   +PR+   SM ++
Sbjct: 6   LLVVCLGIACQGITSVTVRENSPRKLANSMNVI 38


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated
          chloride channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 79 WHVSVFFIASINNRCTTFTIQI 14
          +HV+V  I SIN    T+   I
Sbjct: 34 FHVTVLSIDSINEESMTYVADI 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,719
Number of Sequences: 438
Number of extensions: 2604
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)