Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3757
(532 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 38 7e-04
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 29 0.57
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch... 26 4.0
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 25 5.3
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 5.3
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 25 5.3
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 25 5.3
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 25 7.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.3
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 38.3 bits (85), Expect = 7e-04
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Frame = +2
Query: 221 NGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISM 400
NG + TL+ P V +N++N +++ + + +E S + +I+ G F +G DI
Sbjct: 64 NGARIFTLNRPKV-LNAINVDMIDSILPKLVSLE-ESNLAKVIILKGNGRSFSSGGDIKA 121
Query: 401 ----IENCKTKEEVVSLSKRGHEIFRRIEQSRKPYIAAIQGSCLGGG 529
I++ K E + ++ + + + +KP +A + G +GGG
Sbjct: 122 AALSIQDGKLPEVRHAFAQE-YRLSHTLATYQKPVVALMNGITMGGG 167
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 28.7 bits (61), Expect = 0.57
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 200 HTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNSGIE 340
+ CKL V +VT P V +LN + + +S +N +TN I+
Sbjct: 63 YDNCKLSICVPIVTTCIPYHSVENLNFNIRQNISTTLNLEKTNDSIK 109
>SPBC543.08 |||phosphoinositide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 250
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 196 STYKMQVGQWSLRSHFGLSK 255
S Y + V +WS+ S+FG SK
Sbjct: 38 SIYSIYVDKWSITSYFGNSK 57
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.4 bits (53), Expect = 5.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 480 DCSILLNISCPLLDRLTTSSFVLQFSIMLISAPAMKHPGLPDIMTA 343
D S LLN +L+ L + ++ L P M+H + D+MTA
Sbjct: 499 DKSQLLNAYQAVLNCLQDNDLPVRIQAALALQPLMRHLEVHDVMTA 544
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 5.3
Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Frame = +2
Query: 98 NSKILSALKILRSRKELFISGVHSRKYAVPASQVHTKCKLVNGVYVVTLDSPNVK-VNSL 274
NS + L L+S + GV +R+ + + + L + V +T + +++ +N L
Sbjct: 384 NSTVYQELLNLKSNNSS-VDGVKTRRQLLEENAL-----LSHKVLKLTEEIQDLETLNQL 437
Query: 275 NTQVMEEVSNIVNEIETNSGIEAAVIISGKPGCFIAGADISMIENC--KTKEEVVSLSKR 448
NT++ S +NE++ + + ++IS +P A ++ ++ C ++EE++ L+ +
Sbjct: 438 NTEIEARQSEKLNEVQEETQRLSQLLISSQP----ALTEVKHLKLCLSDSQEELLQLNAK 493
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 5.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -2
Query: 495 IYGFRDCSILLNISCPLL 442
IYG++D ++ + CPL+
Sbjct: 45 IYGYKDLNVTITYECPLM 62
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 120 LRS*EAVRNYSYPVYIAESMPFQQAKYIQNASWSMEFT 233
LRS + S +Y+ +P +AKY+ N S S+ F+
Sbjct: 337 LRSYTLLAQESLTIYLLLFIPKLEAKYLNNLSKSLMFS 374
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 25.0 bits (52), Expect = 7.0
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +2
Query: 152 ISGVHSRKYAVPASQVHTKCKLVNGVYVVTLDSPNVKVNSLNTQVMEEVSNIVNEIETNS 331
+SG+ SR SQV+ C + ++ +P+V++ +NT ++ + E TN+
Sbjct: 28 LSGICSRTIQHADSQVNRLCISPDKKFLAAAGNPHVRLYDINTS--SQMPLMTFEGHTNN 85
Query: 332 GIEAAVIISGK 364
A GK
Sbjct: 86 VTAIAFHCDGK 96
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +3
Query: 438 CLKEDMKYSEESNN-HGN 488
C+K+ M Y EES+ HGN
Sbjct: 424 CVKKQMNYREESHTPHGN 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,936,770
Number of Sequences: 5004
Number of extensions: 37274
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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