Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3756
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343...    30   0.79 
02_02_0729 - 13466293-13466352,13466437-13466512,13466595-13466680     30   0.79 

>05_05_0300 +
           23932947-23933196,23934022-23934123,23934249-23934317,
           23934406-23934446
          Length = 153

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 137 HQFVNVFCLVSNYW*VVLL*KKCTLN 60
           H FV +F LVS++W V ++ KK T N
Sbjct: 29  HHFVAMFLLVSDWWVVAMMQKKSTDN 54


>02_02_0729 - 13466293-13466352,13466437-13466512,13466595-13466680
          Length = 73

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -2

Query: 198 IVILTVCTIKNKERHLSPISSSVCQRFLF 112
           +V L +CT KNKE HLS I+ S   R LF
Sbjct: 35  VVHLFMCTWKNKEPHLSAINDSDELRKLF 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,406,917
Number of Sequences: 37544
Number of extensions: 142268
Number of successful extensions: 197
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)