Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3756
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    27   3.8  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical pr...    26   8.8  
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      26   8.8  

>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 160 KTFKSYFLISLSTFFV 113
           KTF SYFL+S STF +
Sbjct: 387 KTFLSYFLVSFSTFSI 402


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -3

Query: 149 VLFPHQFVNVFCLVSNYW*VVLL*KKCTLNSTKCSFKYAFRY 24
           V  PHQ  NV   V          K C  ++ KCS +YAF Y
Sbjct: 90  VFQPHQLQNVDGYVEADDRFTFYWKYCLPSTRKCSGEYAFTY 131


>Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical
           protein C29E6.1b protein.
          Length = 653

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -3

Query: 149 VLFPHQFVNVFCLVSNYW*VVLL*KKCTLNSTKCSFKYAFRY 24
           V  PHQ  NV   V          K C  ++ KCS +YAF Y
Sbjct: 90  VFQPHQLQNVDGYVEADDRFTFYWKYCLPSTRKCSGEYAFTY 131


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -3

Query: 149 VLFPHQFVNVFCLVSNYW*VVLL*KKCTLNSTKCSFKYAFRY 24
           V  PHQ  NV   V          K C  ++ KCS +YAF Y
Sbjct: 90  VFQPHQLQNVDGYVEADDRFTFYWKYCLPSTRKCSGEYAFTY 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,513,130
Number of Sequences: 27780
Number of extensions: 149036
Number of successful extensions: 280
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)