Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3756
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   4.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   4.0  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   6.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   9.2  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 207 KI*KMASLTQQLSFLPANRS*RRKALNEWVEEYNLNNLQSRQ 332
           +I ++A L   +  L  +R  R   +++W E Y L NLQ ++
Sbjct: 206 RILRLAKLLSLVRLLRLSRLVRY--VSQWEEVYILQNLQKKR 245


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 5/17 (29%), Positives = 13/17 (76%)
 Frame = +2

Query: 44  NYIWCYSMYIFFITIQL 94
           +Y+ CY ++++F+ + L
Sbjct: 215 SYLVCYGIWVYFVPLFL 231


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 5/17 (29%), Positives = 13/17 (76%)
 Frame = +2

Query: 44  NYIWCYSMYIFFITIQL 94
           +Y+ CY ++++F+ + L
Sbjct: 91  SYLVCYGIWVYFVPLFL 107


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -1

Query: 310 RLYSSTHSFKAFLR*ERLAGRKLNC*VKLAIFYILRNYCNINCVYNKE*RKTF 152
           R Y  T   ++  R ER   R+      L+  Y   NY N N  YN   +K +
Sbjct: 57  RKYRETSKERSRDRTERERSREPKIISSLSNNYNYSNYNNYNNNYNNYNKKLY 109


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -3

Query: 143 FPHQFVNVFCLVSNY 99
           FP+ F   FC++ ++
Sbjct: 118 FPYVFGEAFCIIQSF 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,122
Number of Sequences: 438
Number of extensions: 1991
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)