Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3755
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    29   0.63 
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    27   3.3  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    27   3.3  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   3.3  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    26   4.4  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   7.7  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   7.7  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 93  QSPLTKLFPTPSAIPQLWEKLHENMSNTWNEFVSEYDPVESPRALKSMPGAF 248
           QSP   L      + + +  L E   N  N+F   +D +E+ R L S+P  F
Sbjct: 589 QSPAFTLLRDILLLLKDYADLSEPWENVANQFTVSFDELENIRVLNSLPSLF 640


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 448 NGLKEHLRLSRHRLF*C*NYRFRVRDEILAL 540
           +  + H+R SRHR F   N  F+  DE+ AL
Sbjct: 507 DNFESHIRSSRHRRFAENNDNFKDLDELFAL 537


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 502 NYRFRVRDEILALNELKNTGHVKQPNTLTWRYGELAQLCVRATNGS 639
           N+ +R  +      +  NT   K P+TL W   E  Q C    +G+
Sbjct: 94  NWEYRTANSWFCKMKWDNTNVAKVPDTLQWLQRERMQKCSSIGSGN 139


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
 Frame = +3

Query: 39   LLVEQLKQTDRMAQEYTQQSPLTKLFPTPSAIPQLWEKLHENMSNTWNEFVS-------E 197
            ++V++ K         TQ   LTKL    +++   WE   +   + W +++        +
Sbjct: 1082 VVVKEFKPRPSTKPFSTQDEVLTKLPVDQASLKAAWESSQKLTRDDWQDWIRRISIELLK 1141

Query: 198  YDPVESPRALKSMPGAFH--VAGLLLISSVSALRELNKKSNGRN 323
              P  + R+  ++ G +H     L  +S +S   EL  +SN +N
Sbjct: 1142 ESPSSALRSCSTLAGIYHPLARDLFNVSFLSCWDELT-ESNKKN 1184


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 378 ECKRRSLTIIKVFLSPLVTADP 443
           +C  + LTIIK+  +PL   DP
Sbjct: 2   KCSNKVLTIIKLLKAPLAECDP 23


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 198 IQKRIRSMYSTYFHEAFPTI-EVWQKALEII-SLKGFVVY 85
           + KRI S+   YF EA  T  E W +  +II +L+G   Y
Sbjct: 510 VSKRILSLAPAYFREALSTSDEEWSQHRKIIDTLEGSKKY 549


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 312 NGRNRATDGPLTATTLLAAVRRECKRRSLTIIKVFLSPLV 431
           NG  R++  P+  + L      +  RRSLT++  F S ++
Sbjct: 17  NGSRRSSINPILDSELRDKTFEKAHRRSLTLLSSFTSSML 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,935
Number of Sequences: 5004
Number of extensions: 50258
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)