Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3755
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0069 - 19450322-19450348,19451247-19451319,19451535-194517...    31   1.1  
02_04_0071 + 19457502-19458092,19458558-19458723,19458816-194590...    30   1.5  
09_06_0230 + 21717225-21717301,21717888-21717972,21718045-217181...    29   4.5  
02_05_1225 + 35060642-35060815,35061254-35061802,35062284-350623...    29   4.5  
06_03_0313 - 19475203-19475244,19475883-19475976,19476933-194771...    28   7.9  
01_06_1013 + 33808663-33809856                                         28   7.9  

>02_04_0069 -
           19450322-19450348,19451247-19451319,19451535-19451790,
           19451808-19452057
          Length = 201

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 224 FEKHAGCVPRRRSVIDIQRERFERTQQEIEWQKQSH*WSAH 346
           + +H   V R  +VIDI     ER  +E+ W+ +   W  H
Sbjct: 100 WSRHGHMVGRWGTVIDIAGRELERQHEEVAWRDKRGAWRRH 140


>02_04_0071 +
           19457502-19458092,19458558-19458723,19458816-19459027,
           19460103-19460596,19460682-19460730,19460886-19461194
          Length = 606

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +3

Query: 222 ALKSMPGAF--HVAGLLLISSVSALRELNKKSNGR---NRATDGPLTATTLLAAVRRECK 386
           AL SMPGAF  H     L  +  A R   ++S      +RA  GP+    L AAV  +C+
Sbjct: 7   ALHSMPGAFAAHSPASNLPLAADAARGRRRRSANSLHSSRALQGPVRFPGLRAAVECQCQ 66

Query: 387 R 389
           R
Sbjct: 67  R 67


>09_06_0230 +
           21717225-21717301,21717888-21717972,21718045-21718165,
           21718244-21718368,21718940-21718984,21719082-21719345,
           21720067-21720111,21720182-21720212,21721644-21721693,
           21722433-21724310,21724406-21724564,21724821-21724939,
           21726917-21727059,21727670-21727735,21728184-21728317,
           21728454-21728591,21728927-21729186,21729295-21729406,
           21730727-21730909
          Length = 1344

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = +3

Query: 297 LNKKSNGRNRATDGPLTATTLLAAVRRECKRRSLTIIKVFLSPLVTADPRKWPKRT 464
           L  K NG  + TDG    TT     +   K     I K+  SP VT    K  + T
Sbjct: 127 LTLKQNGDTKKTDGTTIQTTCKYCSKDGAKLYPSVIFKMLTSPRVTLSRSKLHRNT 182


>02_05_1225 +
           35060642-35060815,35061254-35061802,35062284-35062348,
           35062417-35062957,35063321-35064610
          Length = 872

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 45  VEQLKQTDRMAQEYTQQS-PLTKLFPTPSAIPQLWEKLHENMSNTWNEFVSEYDPVES 215
           V +LK  D+   E  Q S P+ +LF T        +K HE  S   + + + +DP  S
Sbjct: 437 VYKLKDQDQCVHERKQMSHPVERLFFTKEKDAMHGKKHHEETSTMHSSYSNLFDPAPS 494


>06_03_0313 -
           19475203-19475244,19475883-19475976,19476933-19477129,
           19477254-19477394,19477873-19478073,19478775-19478894,
           19479677-19479859,19479946-19480095,19481305-19481508,
           19481545-19481547
          Length = 444

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 565 VKQPNTLTWRYGELAQLCVRATNGSVEM 648
           +K+ N+ +W  GE  Q+ V   NG+ EM
Sbjct: 205 LKELNSTSWNVGETPQILVPIANGTEEM 232


>01_06_1013 + 33808663-33809856
          Length = 397

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 255 RRGTHPACFSKHEGFRRGRIQKRI 184
           R  T P CFS  E +R  R++ R+
Sbjct: 72  RTNTRPGCFSPSEAWRSNRVKTRV 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,070,849
Number of Sequences: 37544
Number of extensions: 300553
Number of successful extensions: 760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)