Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3755
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021175-3|CAA15963.2|  467|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z68105-5|CAA92123.2|  729|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AL009066-1|CAA15625.2|  729|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z70269-2|CAA94224.1|  143|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AL021175-3|CAA15963.2|  467|Caenorhabditis elegans Hypothetical
           protein Y6E2A.4 protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 66  DRMAQEYTQQSPL-TKLFPTPSAIPQLWEKLHENMSNTWNEFVSEYD 203
           ++    +T ++P+ +K+  TP    +   K HE+M N+ N+ + + D
Sbjct: 214 EKNGTNHTTKNPIPSKIIVTPQENDEAITKFHESMKNSENKIIRKID 260


>Z68105-5|CAA92123.2|  729|Caenorhabditis elegans Hypothetical
           protein F13E6.2 protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
 Frame = +3

Query: 21  INIGDLLLVE-QLKQTDRMAQEYTQQSPLTKLFPTPSAIPQLWEKLHENMSNTWNEFVSE 197
           +++GD+L  +   ++ D M  + +++       PT      L+E+LH   ++ W   +  
Sbjct: 543 LSMGDILRKKINNEKNDEMWDKVSKKMNNGDPIPTKMCRTVLYEELHSRGTSNWGYVIEG 602

Query: 198 YDPVESPRALKSMPGAFHVAGLLLISSVS---ALRELNKKSNGRNRATD 335
           Y   +SP  L  +  +     L ++   +    L  +NK++    R+ D
Sbjct: 603 YP--KSPDQLVDLEHSLQRTDLAILIDCTEQFCLEVINKRNRENKRSDD 649


>AL009066-1|CAA15625.2|  729|Caenorhabditis elegans Hypothetical
           protein F13E6.2 protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
 Frame = +3

Query: 21  INIGDLLLVE-QLKQTDRMAQEYTQQSPLTKLFPTPSAIPQLWEKLHENMSNTWNEFVSE 197
           +++GD+L  +   ++ D M  + +++       PT      L+E+LH   ++ W   +  
Sbjct: 543 LSMGDILRKKINNEKNDEMWDKVSKKMNNGDPIPTKMCRTVLYEELHSRGTSNWGYVIEG 602

Query: 198 YDPVESPRALKSMPGAFHVAGLLLISSVS---ALRELNKKSNGRNRATD 335
           Y   +SP  L  +  +     L ++   +    L  +NK++    R+ D
Sbjct: 603 YP--KSPDQLVDLEHSLQRTDLAILIDCTEQFCLEVINKRNRENKRSDD 649


>Z70269-2|CAA94224.1|  143|Caenorhabditis elegans Hypothetical
           protein ZK1086.2 protein.
          Length = 143

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 117 PTPSAIPQLWEKLHENMSNTWN--EFVSEY 200
           PTP  IP +WE+  E   +  N  E+VS Y
Sbjct: 7   PTPCQIPPIWERNAEMFEDARNFIEYVSTY 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,040,317
Number of Sequences: 27780
Number of extensions: 273149
Number of successful extensions: 790
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)