Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3755
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    27   0.13 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.1  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   3.6  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   3.6  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   8.3  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   8.3  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   8.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 96   SPLTKLFPTPSAIPQLWEKLHENMSNTWNEFVSEYDPVESPRALKSMPGA 245
            +P T +   P  IP+     HEN   T N+      P     ++K+ PG+
Sbjct: 851  TPSTGMMYKPFLIPEQTSISHENNQPTMNKCSDRKRPASQATSVKAEPGS 900


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 105 LKGFVVYILEPFYLFVSIARPVINLR 28
           +K  +VY+ + FYLF+ + R  + LR
Sbjct: 528 IKHDMVYLQKYFYLFMEMDRFAVTLR 553


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 105 LKGFVVYILEPFYLFVSIARPVINLR 28
           +K  +VY+ + FYLF+ + R  + LR
Sbjct: 528 IKHDMVYLQKYFYLFMEMDRFAVTLR 553


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 559 QYSLVRLKLKFHRERENGNFNIKTVDVVIVLNVL 458
           +YS+  L + FH +R  GNF I+     ++L VL
Sbjct: 199 EYSM--LLVYFHLQRHMGNFLIQVYGPCVLLVVL 230


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -3

Query: 532 KFHRERENGNFNIK-TVDVV 476
           KF+   ENGNFN K T D+V
Sbjct: 69  KFNVVDENGNFNEKNTRDIV 88


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 309 ISC*VLSKRSRWISI 265
           ++C VLS +S+W+SI
Sbjct: 62  VTCDVLSWQSKWLSI 76


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 153 LHENMSNTWNEFVSEYDP 206
           L EN    W+   ++YDP
Sbjct: 94  LVENKPELWDSLANKYDP 111


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 153 LHENMSNTWNEFVSEYDP 206
           L EN    W+   ++YDP
Sbjct: 94  LVENKPELWDSLANKYDP 111


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 153 LHENMSNTWNEFVSEYDP 206
           L EN    W+   ++YDP
Sbjct: 94  LVENKPELWDSLANKYDP 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,271
Number of Sequences: 438
Number of extensions: 4043
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)