Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3754
         (740 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ234346-1|ABB29975.1|  494|Homo sapiens RAN binding protein 3 t...    31   5.7  

>DQ234346-1|ABB29975.1|  494|Homo sapiens RAN binding protein 3
           transcript variant a protein.
          Length = 494

 Score = 30.7 bits (66), Expect = 5.7
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = -1

Query: 614 RYLNTSLETSLRSLQISPDTKIILRRRLKN--ISPPGMFKNIKDVNSTNTSDNQLIKLVS 441
           RY+++SLE S  S   S + K I  + +    +SPP + +   D N  N +     +  S
Sbjct: 228 RYISSSLENSTNSADASSN-KFIFGQNMSERVLSPPKLNEVSSDANRENAAAESGSESSS 286

Query: 440 RLAEADRETATSSIPYHTMTGAL*TIPQKI 351
           + A  ++E+   S   +T   A   + +K+
Sbjct: 287 QEATPEKESLAESAAAYTKATARKCLLEKV 316


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,857,425
Number of Sequences: 237096
Number of extensions: 2045716
Number of successful extensions: 3668
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3667
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)