Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3752
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 28 1.1
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.4
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 27 3.2
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 27 3.2
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom... 27 3.2
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 26 5.6
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 7.4
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 25 7.4
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 25 7.4
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 7.4
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 9.8
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 9.8
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 9.8
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Frame = -3
Query: 480 NNVDLVRNVKKYLKCSFLSSEYPRD*TCRIIMAFAAFLDSCLCCMYAIGSYWNFY---NI 310
N+V V N K + + S C FL CL I SY + N+
Sbjct: 325 NSVLSVENAKHVAQTKLVISVLEASIRCAKTFNNLEFLHYCLDISEMISSYLHVEDEKNV 384
Query: 309 FYIALHFYKKNNVFRALIKVIQGIKHTLTRPKRYRLL 199
FY+AL + ++ + LI ++ + + RLL
Sbjct: 385 FYLALCEFLNSSDYSILIATLRTLARLALNDRNNRLL 421
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 452 LTFLTRSTLLIVLLCFGLIYPIVGHPVYMY 541
L L S + ++L FGLIY I+G VY Y
Sbjct: 643 LICLCYSIISPLILVFGLIYFIIGFLVYKY 672
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 519 TMGYIKPKHSSTINNVDLVRNVKKYLKCSFLSSEYP 412
T+GY P ++ST + D+V+ + +++ +SE P
Sbjct: 600 TVGYASPSNASTASFNDIVQRGRSHVRTGSNNSEAP 635
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 446 YFLTFLTRSTLLIVLLCFGLIYPIVGHPVYMYICII 553
YF T + S L++L C+ + I P +++ CI+
Sbjct: 712 YFTTLIFSS--LLILACYAFVSLICMDPFFIFTCIV 745
>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 510 YIKPKHSSTINNVDLVRNV 454
YIK H+ ++NNVDL+ +
Sbjct: 242 YIKNFHNESVNNVDLINKI 260
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 576 GYWSFGRAKGSCNAKAVPKP 635
GYWSF + SC+ + +P P
Sbjct: 317 GYWSFCVGRPSCSRQDIPIP 336
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +1
Query: 472 YIVDSTAMFRLDIPHCGTSCIYVYLYYLWLS 564
Y+ ++ + ++ + G C+Y+YL Y W++
Sbjct: 45 YLNEAPSWYKYSL-ESGLVCLYLYLIYRWIT 74
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 225 TRPKRYRLLITYQRRFNKSDTTDIVP 148
TRPK++ I +N +TTD++P
Sbjct: 95 TRPKQFDECIYSPYSYNNEETTDLLP 120
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 306 YIALHFYKKNNVFRALIKVIQGIKHTL 226
Y L FY+K +FR ++ I+G + TL
Sbjct: 197 YTHLSFYEKRELFRKKLREIEGPEVTL 223
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 494 CFGLIYPIVGHPVYMYICIIYGCQLTIGLLVVWTS*GF 607
CF + + +GH VY++ CI L LL++ S GF
Sbjct: 120 CFFIRFGKLGHCVYLFYCISTNV-LVSSLLLLGGSQGF 156
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 39 PIWTHKSSYHQSVPPR 86
P WT ++S+H++V PR
Sbjct: 898 PEWTTRASHHKAVAPR 913
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 446 YFLTFLTRSTLLIVLLCFGLIYPIVGHPVYMYICIIYGCQ 565
+F+T +RS+ I+ LI +G +Y C +G Q
Sbjct: 523 FFMTLFSRSSSTILPPSILLILTFLGIVASLYYCFAHGLQ 562
>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 379 CCVFRQLSMLYVCNRKLLEFLQYILHCITF 290
CC+F +V NR LLE +Y L ITF
Sbjct: 4 CCIF---CAQFVLNRNLLEANKYKLSEITF 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,731
Number of Sequences: 5004
Number of extensions: 63542
Number of successful extensions: 157
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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