Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3752
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80839-17|AAB37921.1|  372|Caenorhabditis elegans Serpentine rec...    28   5.2  
AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical ...    28   6.8  
U50066-1|AAA93437.2|  378|Caenorhabditis elegans Resistance to i...    27   9.1  
AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical ...    27   9.1  
AF026214-7|AAP68943.1|  640|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U80839-17|AAB37921.1|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein97 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 78  PPRSNRINTGRRNLVLNMFSSTKRVLYLWYRFY*TFFGM*STI 206
           P  +N++   R  L+L  F+       LW++FY +FFG+  TI
Sbjct: 16  PSHANKLELYRILLLLEQFARPS----LWFQFYLSFFGILLTI 54


>AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical
           protein Y54G9A.10 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/73 (24%), Positives = 38/73 (52%)
 Frame = -3

Query: 513 GYIKPKHSSTINNVDLVRNVKKYLKCSFLSSEYPRD*TCRIIMAFAAFLDSCLCCMYAIG 334
           GY+K  ++ +++N+ LV  V++   C FL ++Y +     I +A    +D     + A  
Sbjct: 135 GYLKLHYAISVSNIFLVIAVERSFACYFL-NDYEKKSRFWIAVAI-VLVDQMFNLVVAYL 192

Query: 333 SYWNFYNIFYIAL 295
            +  +++ FY+ L
Sbjct: 193 FFLFYFSFFYMIL 205


>U50066-1|AAA93437.2|  378|Caenorhabditis elegans Resistance to
           inhibitors of cholinesteraseprotein 3 protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 482 IVLLCFGLIYPIVGHPVYM 538
           ++++CF ++YP + HP+ M
Sbjct: 48  VIVVCFAMLYPTLFHPMLM 66


>AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical
           protein Y61B8A.2 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 381 FAAFLDSCLCCMYAIGSYWNFYNIFYI-ALHFYKKNNVFRALI 256
           F AFLD  LC +  +  +   Y  F++  L ++   N F+ L+
Sbjct: 72  FCAFLDLTLCTLSTVYFFLPMYGTFFVGVLSWFGVPNTFQILL 114


>AF026214-7|AAP68943.1|  640|Caenorhabditis elegans Hypothetical
           protein F52H2.1 protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 339 IGSYWNFYNIFYIALHFYKKNNVFRAL-IKVIQGIKHTLTRPKRYRL 202
           IG  WN +NI Y   H+Y  ++    L I  ++ I   L +P   R+
Sbjct: 217 IGPEWNVHNIVYCFKHWYDDSHALHYLSIYDLRAIALELGKPDAVRV 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,496,988
Number of Sequences: 27780
Number of extensions: 355537
Number of successful extensions: 842
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)