Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3751
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   0.97 
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    26   5.2  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    25   6.9  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    25   6.9  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = -2

Query: 391 VCLALKAKNINFTNARNLANGIQIKVQ--TPDDHRALSSYLRKERISFHTY--TLQEERE 224
           +CL  +  ++N T +RN+   +Q+ +     +   A  + + KE  +F +    + +  E
Sbjct: 492 ICLMAELDHLNETKSRNVPATVQVALDEYAQNPSTASETLVNKELANFSSIKEAVSKTLE 551

Query: 223 LRVVIRGIPKELDVELVK 170
           LR  +R +  E DVE+ K
Sbjct: 552 LREKVRAL--ECDVEIQK 567


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = -2

Query: 445 KTQTPPPVILQEKAAWDRVCLALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKE 266
           K+   P +  +    W R+ L  + + I+     NLA G+    +  D    ++  LR  
Sbjct: 313 KSLNNPEIFGRLNEIWARITLIFEGEKISEDQRSNLAKGVVDWRKNSDQLEVITDVLRDH 372

Query: 265 RI--SFHTYTLQEE 230
           ++  S+    +QE+
Sbjct: 373 QVGLSYVVKLMQED 386


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 112 RGREPYNMVLVALQPTPEGKKIFNTQTVCRLSGIAVE 2
           R   PY  ++   +P P+   +   +T+CR   IAV+
Sbjct: 540 RPLRPYAQIIY-FRPPPQASLVGRLRTICRNENIAVD 575


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 380 GQANSIPSCLLLKDNRGRGLGFIFVSPDA 466
           G  NSI   L ++D  G+G GF  V P A
Sbjct: 201 GSLNSIKDALQIQDEDGKG-GFYVVIPQA 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,318
Number of Sequences: 5004
Number of extensions: 36880
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)