Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3751
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1243 - 25527523-25527960,25527993-25528604                       29   3.1  
08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492           29   3.1  
03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968     29   3.1  
02_03_0223 + 16570264-16570357,16570470-16570552,16570974-165710...    29   4.1  
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141...    28   5.4  
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26...    28   5.4  
12_01_0030 + 262452-263210,263332-263575,263867-264165                 28   7.1  
08_02_1422 - 26971803-26971900,26974083-26975061                       28   7.1  
08_01_0553 - 4846808-4847029,4847131-4847748                           28   7.1  
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126...    27   9.4  

>08_02_1243 - 25527523-25527960,25527993-25528604
          Length = 349

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 519 APPPSDSRCAPSPCHSVAASGD 454
           A PP  SRC+PSP  + AA+GD
Sbjct: 107 AAPPG-SRCSPSPSPTAAAAGD 127


>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
          Length = 1141

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -2

Query: 409 KAAWDRVCLALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFH 251
           K +W ++   LK    +  N RNL   +Q ++Q P+ +R +S+ +   R+  H
Sbjct: 116 KTSWHKIARELKDSQCHLQNLRNL--WVQYEIQLPNGNR-VSTDVEDHRLPHH 165


>03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968
          Length = 800

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +2

Query: 284 REGPMVVGCLNLNLNAVREVTGIREIYIFGLKGQANSI 397
           REG   VG LN+N NA  E+   RE+ I G  G   S+
Sbjct: 393 REG---VGYLNMNFNATIEIVTSREVKICGALGPCISL 427


>02_03_0223 +
           16570264-16570357,16570470-16570552,16570974-16571032,
           16571607-16571665,16572276-16572325,16573575-16573612,
           16574619-16574695,16575593-16576503
          Length = 456

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 425 RGRGLGFIFVSPDAATEWHGLGAQRESEGGGATRSRLC 538
           R R  G   V   +  +W    A+R S GGG+ R R C
Sbjct: 392 RRRSSGGGSVRKRSGAQWRSGSARRRSGGGGSVRKRSC 429


>11_01_0179 -
           1412391-1412863,1412947-1413412,1413504-1414551,
           1414639-1414725,1416244-1416411,1416785-1416958,
           1417662-1417720,1418132-1420154,1420549-1420647,
           1420998-1421796,1422101-1422120,1422446-1422513
          Length = 1827

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 3   STAIPESLQTVCVLKIFLPSGVGWRATRTILYGSLPR--PVCIRCTEFTGRP 152
           S A    ++T+C+L   LPSG+    TR   + +  R   +C+ C +F+G P
Sbjct: 775 SLANLHKIRTLCILGSALPSGI----TREACFVTPQRLGQLCLECFKFSGLP 822


>08_01_0036 -
           267236-268165,268255-268299,268485-268574,269485-269805,
           269895-270098,271532-271664,271810-271881,273106-273168,
           273252-275034,275169-275217
          Length = 1229

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 346 RNLANGIQIKVQTPDDHRALSSYLR 272
           +NLAN +Q ++Q PDD+     YLR
Sbjct: 637 QNLANELQSQIQPPDDNIMSIDYLR 661


>12_01_0030 + 262452-263210,263332-263575,263867-264165
          Length = 433

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 632 GPRL-HRRMDSPWYRRVRSVPRSLELPRPLKISKAVN 525
           GPRL H  +++ WY     +P   ELP+ +  ++A++
Sbjct: 45  GPRLQHHILNALWYHTAYPLPTHQELPQDISDTRAMS 81


>08_02_1422 - 26971803-26971900,26974083-26975061
          Length = 358

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 23/98 (23%), Positives = 41/98 (41%)
 Frame = -2

Query: 304 DDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDVELVKADLLEQGLPVNSVHR 125
           D+  + SS L +  +  H Y L    E  +V  G  K  D+  +  D      P+   + 
Sbjct: 117 DNGESWSSSLEQVPLP-HVYPLPVIEEFGIVPNG-GKHFDLAALVVDYRS---PMKCSYS 171

Query: 124 MHTGRGREPYNMVLVALQPTPEGKKIFNTQTVCRLSGI 11
           MH    ++    V+  + P PE +K+  T+ +    G+
Sbjct: 172 MHIYSSKDTNWRVIPMVDPYPEVRKVIATKVITIAEGV 209


>08_01_0553 - 4846808-4847029,4847131-4847748
          Length = 279

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +2

Query: 407 LLLKDNRGRGL--GFI--FVSPDAATEWHGLGAQRESEGGGATRS 529
           LL+  +R  GL  G +  F+  D A  + GLGA   S GGG  R+
Sbjct: 98  LLVDQDRAGGLPLGGVADFLERDTAEHFAGLGALYSSNGGGVARA 142


>01_07_0238 +
           42209407-42209964,42210039-42210561,42212577-42212665,
           42212981-42213191,42213265-42213446,42213573-42213812,
           42214691-42214878,42215230-42215323,42215407-42215463,
           42215552-42215686,42216460-42216525,42216745-42216858,
           42217849-42218010,42218093-42218221,42218323-42218424,
           42219428-42219504,42219600-42219957
          Length = 1094

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
 Frame = -2

Query: 247 YTLQEERELRVVIRGIPKELDVELVKADLL-EQGLPVNSVHRMHTGRGREPY---NMVLV 80
           Y+L    E+ +++ GI  +LD E+++  LL  Q L V+ +        ++ +   N ++V
Sbjct: 719 YSLARLDEIMMLLHGIKADLDNEVLEGQLLCYQYLLVHMIKANEENTSKKAFLILNELIV 778

Query: 79  ALQPTPEGKKI 47
           AL+   E +++
Sbjct: 779 ALKSKKESRRL 789


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,759,884
Number of Sequences: 37544
Number of extensions: 294028
Number of successful extensions: 911
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)