Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3751
         (632 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative singl...    49   6e-06
AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein ...    46   3e-05
AY561850-1|AAS68533.1|  970|Drosophila melanogaster gag protein ...    46   4e-05
AJ566116-1|CAD92792.1|  970|Drosophila melanogaster gag protein ...    46   4e-05
AF237761-1|AAF81410.1|  501|Drosophila melanogaster unknown prot...    45   1e-04
X17551-1|CAA35586.1|  565|Drosophila melanogaster ORF1 for putat...    41   0.001
BT014916-1|AAT47767.1|  409|Drosophila melanogaster RE14563p pro...    41   0.002
M38643-1|AAA28939.1|  549|Drosophila melanogaster protein ( D.me...    31   1.3  
M22874-1|AAA28674.1|  583|Drosophila melanogaster nucleic acid-b...    31   1.3  
X68816-2|CAA48714.1|  536|Drosophila melanogaster T-element prot...    29   4.0  
X68130-1|CAA48237.1|  943|Drosophila melanogaster protein ( D.me...    29   4.0  
U06920-1|AAC17188.3|  921|Drosophila melanogaster probable gag p...    29   4.0  
S56442-2|AAA14198.2|  536|Drosophila melanogaster Orf2 protein.        29   4.0  
AE014298-825|AAF46105.1|  362|Drosophila melanogaster CG6048-PA ...    29   4.0  
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    28   9.1  

>U14101-1|AAC46493.1| 1043|Drosophila melanogaster putative
           single-stranded nucleicacid binding protein protein.
          Length = 1043

 Score = 48.8 bits (111), Expect = 6e-06
 Identities = 27/113 (23%), Positives = 53/113 (46%)
 Frame = -2

Query: 385 LALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIR 206
           L  KA   +FT    L N I+I+ +T D H A+ + L +  I  H++  +  +  ++VIR
Sbjct: 656 LNYKAGVNSFTTKSELGNNIRIQAKTMDAHNAIQNVLLEANIPLHSHQPKSAKGFQIVIR 715

Query: 205 GIPKELDVELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQPTPEGKKI 47
            + +    + +++ L + G+    +  M     R P  +  V + P  +G  +
Sbjct: 716 HLHQSTPTKWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHL 768


>AY600955-1|AAT12844.1| 1047|Drosophila melanogaster gag protein
           protein.
          Length = 1047

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 26/113 (23%), Positives = 53/113 (46%)
 Frame = -2

Query: 385 LALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIR 206
           L  KA   +FT    L N I+I+ +T D + A+ + L +  I  H++  +  +  ++VIR
Sbjct: 656 LNYKAGVNSFTTKSELGNNIRIQAKTMDAYNAIQNVLLEANIPLHSHQPKSAKGFQIVIR 715

Query: 205 GIPKELDVELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQPTPEGKKI 47
            + +    + +++ L + G+    +  M     R P  +  V + P  +G  +
Sbjct: 716 HLHQSTPTKWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHL 768


>AY561850-1|AAS68533.1|  970|Drosophila melanogaster gag protein
           protein.
          Length = 970

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 26/113 (23%), Positives = 53/113 (46%)
 Frame = -2

Query: 385 LALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIR 206
           L  KA   +FT    L N I+I+ +T D ++A+ + L    I  H++  +  +  ++VIR
Sbjct: 579 LNYKAGVNSFTTKSELGNNIRIQAKTMDAYKAIQNVLLGANIPLHSHQPKSAKGFQIVIR 638

Query: 205 GIPKELDVELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQPTPEGKKI 47
            + +    + +++ L + G+    +  M     R P  +  V + P  +G  +
Sbjct: 639 HLHQSTPTKWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHL 691


>AJ566116-1|CAD92792.1|  970|Drosophila melanogaster gag protein
           protein.
          Length = 970

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 26/113 (23%), Positives = 53/113 (46%)
 Frame = -2

Query: 385 LALKAKNINFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIR 206
           L  KA   +FT    L N I+I+ +T D ++A+ + L    I  H++  +  +  ++VIR
Sbjct: 579 LNYKAGVNSFTTKSELGNNIRIQAKTMDAYKAIQNVLLGANIPLHSHQPKSAKGFQIVIR 638

Query: 205 GIPKELDVELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQPTPEGKKI 47
            + +    + +++ L + G+    +  M     R P  +  V + P  +G  +
Sbjct: 639 HLHQSTPTKWIESQLQDIGIATKFIRAMQFRDTRNPMRIHEVEVVPKADGSHL 691


>AF237761-1|AAF81410.1|  501|Drosophila melanogaster unknown
           protein.
          Length = 501

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
 Frame = -2

Query: 451 KNKTQTPPPVILQEKAAWDRVCLALKA-KNI---NFTNARNLANGI-QIKVQTPDDHRAL 287
           K     PPP++++     D V L +++ +NI       AR   +G+ ++     +  R +
Sbjct: 121 KRAQSKPPPIVME---GVDDVYLMMQSIENIVDLEKIEARASMSGVLRLYAADANTFRTI 177

Query: 286 SSYLRKERISFHTYTLQEERELRVVIRGIPKELDVELVKADLLEQGLPVNSVH----RMH 119
            ++L  E   FH Y L+E+R  RV ++G+        +K +L + G  V  +H    R  
Sbjct: 178 VNWLEIEEYEFHCYQLKEDRPYRVCVKGLHHSTLHHQIKDELEKIGHKVLDIHTPLRRNE 237

Query: 118 TGRGR-EPYNMVLVALQPTPEGKKIFNTQTVCRL 20
            G  +  P NM  + +      K+I   + +C +
Sbjct: 238 PGTSKASPVNMFFLNIAAAANNKEILAVKALCHM 271


>X17551-1|CAA35586.1|  565|Drosophila melanogaster ORF1 for putative
           RNA bindingprotein protein.
          Length = 565

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
 Frame = -2

Query: 445 KTQTPPPVILQEKAAW----DRVCLALKAKNINFTNARNLANGIQIKVQTPDDHRALSSY 278
           K   PPP+ ++E++        V L   +K       +   + I++++QT  DHR ++ Y
Sbjct: 218 KKTRPPPIFIREQSTNALVNKLVALIGDSKFHIIPLKKGNIHEIKLQIQTEADHRIVTKY 277

Query: 277 LRKERISFHTYTLQEERELRVVIRGI-----PKELDVELVKADLLEQGLPVNSVHR 125
           L     +++TY L+  + L+VV++GI     P E+ +E +KA        +N +++
Sbjct: 278 LNDAGKNYYTYQLKSCKGLQVVLKGIEATVTPAEI-IEALKAKNFSAKTAINILNK 332


>BT014916-1|AAT47767.1|  409|Drosophila melanogaster RE14563p
           protein.
          Length = 409

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
 Frame = -2

Query: 445 KTQTPPPVILQEKAAWDRVCLALKAKNINFTNARNLANG----IQIKVQTPDDHRALSSY 278
           K   PPP+ ++E++    V   +     +  +   L  G    I++++QT  DHR ++ Y
Sbjct: 62  KKTRPPPIFIREQSTNALVNKLVDLIGDSKFHIIPLKKGNIHEIKLQIQTEADHRIVTKY 121

Query: 277 LRKERISFHTYTLQEERELRVVIRGI-----PKELDVELVKADLLEQGLPVNSVHR 125
           L     +++TY L+  + L+VV++GI     P E+ +E +KA        +N +++
Sbjct: 122 LNDAGKNYYTYQLKSCKGLQVVLKGIEATVTPAEI-IEALKAKNFSAKTAINILNK 176


>M38643-1|AAA28939.1|  549|Drosophila melanogaster protein (
           D.melanogaster mobileelement jockey gag-specific protein
           gene, complete cds.).
          Length = 549

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = -2

Query: 325 QIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDVELVKADLLEQGL 146
           +I    PD  R     L K    F  + L+EE+  RVV++GI   +    ++    + G 
Sbjct: 238 RIYTANPDAFRTAVKELNKLNCQFWHHQLKEEKPYRVVLKGIHANVPSSQIEQAFSDHGY 297

Query: 145 PVNSVH 128
            V +++
Sbjct: 298 EVLNIY 303


>M22874-1|AAA28674.1|  583|Drosophila melanogaster nucleic
           acid-binding protiein protein.
          Length = 583

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = -2

Query: 325 QIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDVELVKADLLEQGL 146
           +I    PD  R     L K    F  + L+EE+  RVV++GI   +    ++    + G 
Sbjct: 272 RIYTANPDAFRTAVKELNKLNCQFWHHQLKEEKPYRVVLKGIHANVPSSQIEQAFSDHGY 331

Query: 145 PVNSVH 128
            V +++
Sbjct: 332 EVLNIY 337


>X68816-2|CAA48714.1|  536|Drosophila melanogaster T-element
           protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 21/102 (20%), Positives = 38/102 (37%)
 Frame = -2

Query: 361 NFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDV 182
           ++T      NG++I+ +    +  +   L    +   T   + ER  RV+IR +      
Sbjct: 110 SYTTRAIEGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPC 169

Query: 181 ELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQPTPEG 56
             +  +LL+ G     V  M       P  M  V +    +G
Sbjct: 170 SWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDG 211


>X68130-1|CAA48237.1|  943|Drosophila melanogaster protein (
           D.melanogaster DNA sequenceof Het-A transposable element
           9D4. ).
          Length = 943

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 21/102 (20%), Positives = 38/102 (37%)
 Frame = -2

Query: 361 NFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDV 182
           ++T      NG++I+ +    +  +   L    +   T   + ER  RV+IR +      
Sbjct: 517 SYTTRAIEGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPC 576

Query: 181 ELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQPTPEG 56
             +  +LL+ G     V  M       P  M  V +    +G
Sbjct: 577 SWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDG 618


>U06920-1|AAC17188.3|  921|Drosophila melanogaster probable gag
           protein protein.
          Length = 921

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 21/102 (20%), Positives = 38/102 (37%)
 Frame = -2

Query: 361 NFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDV 182
           ++T      NG++I+ +    +  +   L    +   T   + ER  RV+IR +      
Sbjct: 495 SYTTRAIEGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPC 554

Query: 181 ELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQPTPEG 56
             +  +LL+ G     V  M       P  M  V +    +G
Sbjct: 555 SWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDG 596


>S56442-2|AAA14198.2|  536|Drosophila melanogaster Orf2 protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 21/102 (20%), Positives = 38/102 (37%)
 Frame = -2

Query: 361 NFTNARNLANGIQIKVQTPDDHRALSSYLRKERISFHTYTLQEERELRVVIRGIPKELDV 182
           ++T      NG++I+ +    +  +   L    +   T   + ER  RV+IR +      
Sbjct: 110 SYTTRAIEGNGVRIQAKDMTAYNKIKEVLVANGLPLFTNQPKSERGFRVIIRHLHHSTPC 169

Query: 181 ELVKADLLEQGLPVNSVHRMHTGRGREPYNMVLVALQPTPEG 56
             +  +LL+ G     V  M       P  M  V +    +G
Sbjct: 170 SWIVEELLKLGFQARFVRNMTNPATGGPMRMFEVEIVMAKDG 211


>AE014298-825|AAF46105.1|  362|Drosophila melanogaster CG6048-PA
           protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = +3

Query: 24  LQTVCVLKIFLPSGVGWRATRTILYGSLPRPVCIRCTEFTGRPCSNRSAFTSSTSNSLGI 203
           L  V +L IFLPSG+    TRT L     RP   R     GR  +   A   +T + +GI
Sbjct: 7   LLAVALLLIFLPSGLRGATTRTHLDTKAIRP---RFNADPGRIINGTEASLGATRHQVGI 63


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
             protein.
          Length = 23015

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 537   QSRERVAPPPSDSRCAPSPC 478
             Q   +V PPP    C PSPC
Sbjct: 20796 QCTRQVTPPPPSDPCYPSPC 20815


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,155,594
Number of Sequences: 53049
Number of extensions: 464896
Number of successful extensions: 1412
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)