Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3750
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0011 + 11788818-11789590,11789999-11790098,11790144-117903...    31   1.3  
06_01_0077 + 626126-626137,626222-627421                               29   5.3  

>10_07_0011 +
           11788818-11789590,11789999-11790098,11790144-11790380,
           11790683-11790754
          Length = 393

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 26/84 (30%), Positives = 43/84 (51%)
 Frame = -1

Query: 646 NKIRWVKSLSDISLNTRPFIYI*IREAKTLYPFLRKLRARRSMKFSTLIENIEKKCTMLI 467
           +K + +KS SDI+LN  P+IY+  R  K ++     L     M++  LI ++  +  ++ 
Sbjct: 264 DKYQVIKSPSDINLNNHPYIYL-GRSKKGVWLLHEVLLGGGQMEW-MLIHDVSLE-QIMA 320

Query: 466 FF*SNPQKIH*IDKENITHTTYHG 395
            F  NP+ +    K  I H TY G
Sbjct: 321 DFRWNPEAV----KPWIKHNTYRG 340


>06_01_0077 + 626126-626137,626222-627421
          Length = 403

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 345 KIKSLTINSMHACVRQIPWYVVC 413
           KIK+L  ++M+ C    PW+VVC
Sbjct: 252 KIKTLWWDNMNECPYMRPWFVVC 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,844
Number of Sequences: 37544
Number of extensions: 283158
Number of successful extensions: 431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)