Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3748
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    27   1.9  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   7.8  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   7.8  

>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +3

Query: 390 KGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLI 569
           KG+  D+ F F T  S +   HR+   +L   +  K +  G  + D  K   K W +G  
Sbjct: 289 KGLSHDDVFLFPTGMSAIYNTHRILRLVLD--DSRKSVCFGFCYVDTLKILQK-WGSGCY 345

Query: 570 F 572
           F
Sbjct: 346 F 346


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = -1

Query: 676 EERVPSTRYRKERFDKKSRMMSTRLSRHRPHLNSLKIKPLCQTLSNAFATSKKRAPVYNG 497
           +E+  S R     FD+K R     ++  RP L S+  K L ++ SN     +K A +   
Sbjct: 277 KEKEGSIRRNLLAFDRKVRKQEKLIASKRPELISIAEKAL-ESKSNLRKIQRKAAEIEKD 335

Query: 496 FGRLSPT 476
           +   + T
Sbjct: 336 YSDQAST 342


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 531 AKAFDKVWHNGLIFKLFRWGRCRDSLVLIIRDFLSNRSFRY 653
           A+  D+VW     + LFR   CRD L L+    L    F Y
Sbjct: 199 ARHLDQVWDEKSTY-LFRLEVCRDGLRLLAYSLLFMYQFPY 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,863,132
Number of Sequences: 5004
Number of extensions: 58244
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)