Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3748
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458...    34   0.12 
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    32   0.37 
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411...    29   3.5  
07_03_1328 + 25838952-25839155,25839412-25839959,25840167-25840482     28   8.0  
04_03_0028 + 9698427-9698849,9698862-9699227                           28   8.0  
03_05_1007 - 29637911-29638333,29640095-29640282,29640688-296407...    28   8.0  
03_02_0941 - 12589537-12590109,12590196-12590390,12590521-12590718     28   8.0  
01_01_0693 + 5355081-5355106,5355969-5356056,5356079-5356141,535...    28   8.0  

>11_04_0144 +
           14044973-14044984,14045050-14045183,14045329-14045824,
           14046097-14046117,14047504-14047767,14048635-14048715
          Length = 335

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
 Frame = +3

Query: 87  EVKDLIKDLRPRKAPGSDGISNRVI-KLLPV--QLIVMLASIFNAAMANCIFPAVWKEAD 257
           EV +LIK ++P KAP  DGI+   + K  P+  Q    LA+ F+A   + + P    ++ 
Sbjct: 226 EVDNLIKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLAAHFHACYTD-LQPI--NKSF 282

Query: 258 VIGIHKPGKPKNHPTSYRPISLL 326
           +  + K   P+     YRPISL+
Sbjct: 283 ITLVPKKSSPET-VNDYRPISLM 304


>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +3

Query: 72  PVTPIEVKDLIKDLRPRKAPGSDG--ISN--RVIKLLPVQLIVMLASIFNAAMAN 224
           P +  E+KD +  + P KAPG DG  + N   + K  P+ L  +L  I +  +AN
Sbjct: 152 PYSDDEIKDALFQMGPTKAPGPDGRKVHNPEHLSKFRPISLCNVLYKIASKVLAN 206


>01_06_1342 -
           36438869-36439459,36439567-36439627,36440751-36441130,
           36441955-36442761
          Length = 612

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/65 (33%), Positives = 29/65 (44%)
 Frame = +2

Query: 320 PPHVSRQAV*ASALQAPQRFRLIQGHSHR*TIRIPYKSLMRSTGAPPHGAHSCGA*STKT 499
           P HV+  AV A+A  A  +   +  HS R  +R P  +       PPHG H  G    + 
Sbjct: 37  PQHVAGAAVAAAAAAAGGQMYHVPQHSRREKLRFPPDA---GDSPPPHG-HGHGHAPQQQ 92

Query: 500 VIHGS 514
             HGS
Sbjct: 93  QQHGS 97


>07_03_1328 + 25838952-25839155,25839412-25839959,25840167-25840482
          Length = 355

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 275 FMYADNVRFFPHRGKDTVRH-SGIENRCQHHDELDG*KFNNAVRYTVGTGSLAR 117
           FM A  +R+  H  KD  +   G+E  C   DE+D   F  + + T+G G++AR
Sbjct: 103 FMRALRLRWLWHEWKDPNKPWVGLEIPC---DEVDKSLFAASTKITIGDGNIAR 153


>04_03_0028 + 9698427-9698849,9698862-9699227
          Length = 262

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 574 LKIKPLCQTLSNAFATSKKRAPVY--NGFGRLSP 479
           L++KPL Q L NAF    K APV     F ++ P
Sbjct: 226 LELKPLPQGLHNAFLHGDKEAPVVISTSFPKMKP 259


>03_05_1007 -
           29637911-29638333,29640095-29640282,29640688-29640773,
           29641108-29641173,29641289-29641331,29641398-29642328
          Length = 578

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 184 MSWTGRSLITRLDIP-SEPGA 125
           MSW  RSL T L+IP  +PGA
Sbjct: 1   MSWLARSLATSLNIPEDDPGA 21


>03_02_0941 - 12589537-12590109,12590196-12590390,12590521-12590718
          Length = 321

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 34  RSSLLATIGMRYH-PSPR*KLKT*SKTYVLARLPVPTVYLTALLNFYPSNSS*CWHLFSM 210
           R S++   G  YH P  R   +T S+    + +P PT+ L  L++ + +       L  +
Sbjct: 126 RDSIVTLGGPSYHVPLGRRDARTASQAAANSSIPAPTLNLDGLVSSFAAQGLSVQDLVLL 185

Query: 211 PLWRTVSFPRC 243
               T+ F RC
Sbjct: 186 SGAHTLGFSRC 196


>01_01_0693 +
           5355081-5355106,5355969-5356056,5356079-5356141,
           5356607-5356705
          Length = 91

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 423 RTNHSCVQQVHRLTEHILVGLN--RPKPLYTGALFFDVAKAFDKVWHNGLI 569
           RTN  CV++   +   +LVG N    K +  G L   VA   D  W  G I
Sbjct: 21  RTNGKCVKETEAIRSELLVGENGINDKQIKKGLL---VASRVDGEWSRGTI 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,178,785
Number of Sequences: 37544
Number of extensions: 437889
Number of successful extensions: 1253
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)