Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3748
(688 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 163 2e-40
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 137 1e-32
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 136 3e-32
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 135 5e-32
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 134 8e-32
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 134 8e-32
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 134 8e-32
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 134 8e-32
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 134 8e-32
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 134 8e-32
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 134 8e-32
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 126 3e-29
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 126 3e-29
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 126 3e-29
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 126 3e-29
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 124 1e-28
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 122 6e-28
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 114 1e-25
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 114 1e-25
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 112 5e-25
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 96 5e-20
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 93 2e-19
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 69 8e-12
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 65 7e-11
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 63 4e-10
AY121617-1|AAM51944.1| 620|Drosophila melanogaster GH03958p pro... 29 7.9
AJ276682-1|CAB93141.1| 620|Drosophila melanogaster 15,15' beta ... 29 7.9
AE014297-1742|AAF54978.1| 620|Drosophila melanogaster CG9347-PA... 29 7.9
AB041507-1|BAA94508.1| 620|Drosophila melanogaster DRPE65 protein. 29 7.9
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 163 bits (396), Expect = 2e-40
Identities = 87/207 (42%), Positives = 122/207 (58%), Gaps = 3/207 (1%)
Frame = +3
Query: 72 PVTPIEVKDL---IKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAV 242
P+ PI V+++ IK L +K+PG D + N +K LPV+ I+ LA I+NA + FP
Sbjct: 433 PIKPIRVEEIVEAIKSLPLKKSPGIDNVCNATLKALPVRAILYLALIYNAILRVQFFPKQ 492
Query: 243 WKEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGF 422
WK A ++ IHKPGKP+ P SYRPISLL S D ++ + IL D QFGF
Sbjct: 493 WKMAAILMIHKPGKPEESPESYRPISLLSSLSKLWERLIANRLNDIMTERRILPDHQFGF 552
Query: 423 RTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRD 602
R HS V+QVHRLT+HIL + + Y A+F D+ +AFD+VWH+GLI K+ +
Sbjct: 553 RQGHSTVEQVHRLTKHILQAFDDKE--YCNAVFIDMQQAFDRVWHDGLISKVKKLFPA-- 608
Query: 603 SLVLIIRDFLSNRSFRYRVEGTRSSPR 683
+++ +L +R F RV + S PR
Sbjct: 609 PYYGVLKSYLEDRRFMVRVRNSYSIPR 635
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 137 bits (332), Expect = 1e-32
Identities = 81/210 (38%), Positives = 108/210 (51%), Gaps = 2/210 (0%)
Frame = +3
Query: 63 ALPP--VTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFP 236
+LPP VT EVK+LI L +KAPG D + NR I+LLP Q + L IFN+ + FP
Sbjct: 234 SLPPSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLVLIFNSVLDVGYFP 293
Query: 237 AVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQF 416
WK A +I IHK GK SYRPISLL S + QF
Sbjct: 294 KAWKSASIIMIHKTGKTPTDVDSYRPISLLPSLGKIMERLILNRLLTCKDVTKAIPKFQF 353
Query: 417 GFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRC 596
GFR H +Q+HR+ L + + Y F D+ +AFD+VWH GL++K R
Sbjct: 354 GFRLQHGTPEQLHRVVNFALEAMENKE--YAVGAFLDIQQAFDRVWHPGLLYKAKR--LF 409
Query: 597 RDSLVLIIRDFLSNRSFRYRVEGTRSSPRP 686
L L+++ FL R+F V+G +SS +P
Sbjct: 410 PPQLYLVVKSFLEERTFHVSVDGYKSSIKP 439
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 136 bits (329), Expect = 3e-32
Identities = 76/202 (37%), Positives = 110/202 (54%)
Frame = +3
Query: 72 PVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKE 251
P+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ + +P WK
Sbjct: 480 PITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKH 539
Query: 252 ADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTN 431
A V I KPGK N P SYRPISLL K + QFGFR
Sbjct: 540 AQVKMILKPGKSANEPRSYRPISLLSGLSKIFERLLLKRLFKVDLFKKAIPLHQFGFRKE 599
Query: 432 HSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLV 611
H QQ+ R+T+ IL R + Y A+F D+++AFD+VWH GL+ KL + +L
Sbjct: 600 HGSEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKLAK--ILPYNLY 655
Query: 612 LIIRDFLSNRSFRYRVEGTRSS 677
+I+ +L+NR+F + + +S
Sbjct: 656 IILESYLTNRTFEVKDQAGETS 677
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 135 bits (327), Expect = 5e-32
Identities = 79/207 (38%), Positives = 105/207 (50%)
Frame = +3
Query: 66 LPPVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVW 245
L VT EVK+LI L +KAPG D + NR I+LLP Q + LA IFN+ + FP W
Sbjct: 435 LSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAW 494
Query: 246 KEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFR 425
K A +I IHK GK SYRP SLL S + QFGFR
Sbjct: 495 KSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFR 554
Query: 426 TNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDS 605
H +Q+HR+ L + + Y F D+ +AFD+VWH GL++K R
Sbjct: 555 LQHGTPEQLHRVVNFALEAMENKE--YAVGAFLDIQQAFDRVWHPGLLYKAKR--LFPPQ 610
Query: 606 LVLIIRDFLSNRSFRYRVEGTRSSPRP 686
L L+++ FL R+F V+G +SS +P
Sbjct: 611 LYLVVKSFLEERTFHVSVDGYKSSIKP 637
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 134 bits (325), Expect = 8e-32
Identities = 76/202 (37%), Positives = 110/202 (54%)
Frame = +3
Query: 72 PVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKE 251
P+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ + +P WK
Sbjct: 364 PITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKH 423
Query: 252 ADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTN 431
A V I KPGK N P SYRPISLL K + QFGFR
Sbjct: 424 AQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKE 483
Query: 432 HSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLV 611
H QQ+ R+T+ IL R + Y A+F D+++AFD+VWH GL+ KL + +L
Sbjct: 484 HGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKLAK--ILPYNLY 539
Query: 612 LIIRDFLSNRSFRYRVEGTRSS 677
+I+ +L+NR+F + + +S
Sbjct: 540 IILESYLTNRTFEVKDQAGETS 561
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 134 bits (325), Expect = 8e-32
Identities = 75/202 (37%), Positives = 110/202 (54%)
Frame = +3
Query: 72 PVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKE 251
P+T E+ + IK+L+ KAPG D I+N++IK LP + + L I+N+ + +P WK
Sbjct: 492 PITLNELNEEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKH 551
Query: 252 ADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTN 431
A V I KPGK N P SYRPISLL K + QFGFR
Sbjct: 552 AQVKMILKPGKSSNEPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKE 611
Query: 432 HSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLV 611
H QQ+ R+T+ IL R + Y A+F D+++AFD+VWH GL+ KL + +L
Sbjct: 612 HGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKLAK--ILPYNLY 667
Query: 612 LIIRDFLSNRSFRYRVEGTRSS 677
+I+ +L+NR+F + + +S
Sbjct: 668 IILESYLTNRTFEVKDQAGETS 689
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 134 bits (325), Expect = 8e-32
Identities = 76/202 (37%), Positives = 110/202 (54%)
Frame = +3
Query: 72 PVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKE 251
P+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ + +P WK
Sbjct: 480 PITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKH 539
Query: 252 ADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTN 431
A V I KPGK N P SYRPISLL K + QFGFR
Sbjct: 540 AQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKE 599
Query: 432 HSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLV 611
H QQ+ R+T+ IL R + Y A+F D+++AFD+VWH GL+ KL + +L
Sbjct: 600 HGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKLAK--ILPYNLY 655
Query: 612 LIIRDFLSNRSFRYRVEGTRSS 677
+I+ +L+NR+F + + +S
Sbjct: 656 IILESYLTNRTFEVKDQAGETS 677
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 134 bits (325), Expect = 8e-32
Identities = 76/202 (37%), Positives = 110/202 (54%)
Frame = +3
Query: 72 PVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKE 251
P+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ + +P WK
Sbjct: 480 PITLKELNDEIKNLKNSKAPGKDLITNQLIKALPTKATLYLILIYNSILRIGYYPDAWKH 539
Query: 252 ADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTN 431
A V I KPGK N P SYRPISLL K + QFGFR
Sbjct: 540 AQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKE 599
Query: 432 HSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLV 611
H QQ+ R+T+ IL R + Y A+F D+++AFD+VWH GL+ KL + +L
Sbjct: 600 HGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKLAK--ILPYNLY 655
Query: 612 LIIRDFLSNRSFRYRVEGTRSS 677
+I+ +L+NR+F + + +S
Sbjct: 656 IILESYLTNRTFEVKDQAGETS 677
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 134 bits (325), Expect = 8e-32
Identities = 76/202 (37%), Positives = 110/202 (54%)
Frame = +3
Query: 72 PVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKE 251
P+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ + +P WK
Sbjct: 442 PITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKH 501
Query: 252 ADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTN 431
A V I KPGK N P SYRPISLL K + QFGFR
Sbjct: 502 AQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKE 561
Query: 432 HSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLV 611
H QQ+ R+T+ IL R + Y A+F D+++AFD+VWH GL+ KL + +L
Sbjct: 562 HGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKLAK--ILPYNLY 617
Query: 612 LIIRDFLSNRSFRYRVEGTRSS 677
+I+ +L+NR+F + + +S
Sbjct: 618 IILESYLTNRTFEVKDQAGETS 639
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 134 bits (325), Expect = 8e-32
Identities = 76/202 (37%), Positives = 110/202 (54%)
Frame = +3
Query: 72 PVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKE 251
P+T E+ D IK+L+ KAPG D I+N++IK LP + + L I+N+ + +P WK
Sbjct: 480 PITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKH 539
Query: 252 ADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTN 431
A V I KPGK N P SYRPISLL K + QFGFR
Sbjct: 540 AQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKE 599
Query: 432 HSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLV 611
H QQ+ R+T+ IL R + Y A+F D+++AFD+VWH GL+ KL + +L
Sbjct: 600 HGTEQQIARVTQFILEAFERKE--YCSAVFLDISEAFDRVWHEGLLLKLAK--ILPYNLY 655
Query: 612 LIIRDFLSNRSFRYRVEGTRSS 677
+I+ +L+NR+F + + +S
Sbjct: 656 IILESYLTNRTFEVKDQAGETS 677
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 134 bits (325), Expect = 8e-32
Identities = 69/171 (40%), Positives = 93/171 (54%)
Frame = +3
Query: 66 LPPVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVW 245
+ P P EV ++I KAPG D I N +K LP Q I+ + +FNA + FP W
Sbjct: 433 ITPFEPCEVAEVIVRQSNNKAPGHDVICNATLKALPRQAILYITLVFNAIVRLQYFPYQW 492
Query: 246 KEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFR 425
K + IHKPGKP+ P SYRPISLL S + ++GI + QFGFR
Sbjct: 493 KLGIISMIHKPGKPEREPASYRPISLLPSISKVFERLIAVRIVSIMEAQGITPEHQFGFR 552
Query: 426 TNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKL 578
H V+Q+HR+ E IL + + Y +LF D+ +AFD+VWH GL K+
Sbjct: 553 AGHCTVEQLHRVVEQILTAYDSKE--YCNSLFLDIREAFDRVWHIGLQLKI 601
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 126 bits (304), Expect = 3e-29
Identities = 73/202 (36%), Positives = 104/202 (51%)
Frame = +3
Query: 72 PVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKE 251
PVT E+ LI L +KAPG+D ++N+ I LP + + L I+N + FP WK
Sbjct: 36 PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKH 95
Query: 252 ADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTN 431
A + I KPGK SYRPISLL D S + QFGFR +
Sbjct: 96 ASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFGFRKD 155
Query: 432 HSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLV 611
H Q+ R+T+ IL + A F D+ +AFD+VWH+GL++KL R L
Sbjct: 156 HGAEHQLARVTQFILKAFDEKD--VCSATFLDITEAFDRVWHDGLLYKLSR--LIPRYLF 211
Query: 612 LIIRDFLSNRSFRYRVEGTRSS 677
++ ++LSNR+F R++G +S
Sbjct: 212 DLLENYLSNRTFSVRIDGETTS 233
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 126 bits (304), Expect = 3e-29
Identities = 73/202 (36%), Positives = 104/202 (51%)
Frame = +3
Query: 72 PVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKE 251
PVT E+ LI L +KAPG+D ++N+ I LP + + L I+N + FP WK
Sbjct: 483 PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKH 542
Query: 252 ADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTN 431
A + I KPGK SYRPISLL D S + QFGFR +
Sbjct: 543 ASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILPKRLYDIDSFAKAIPSHQFGFRKD 602
Query: 432 HSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLV 611
H Q+ R+T+ IL + A F D+ +AFD+VWH+GL++KL R L
Sbjct: 603 HGAEHQLARVTQFILKAFDEKD--VCSATFLDITEAFDRVWHDGLLYKLSR--LIPRYLF 658
Query: 612 LIIRDFLSNRSFRYRVEGTRSS 677
++ ++LSNR+F R++G +S
Sbjct: 659 DLLENYLSNRTFSVRIDGETTS 680
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 126 bits (304), Expect = 3e-29
Identities = 73/202 (36%), Positives = 104/202 (51%)
Frame = +3
Query: 72 PVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKE 251
PVT E+ LI L +KAPG+D ++N+ I LP + + L I+N + FP WK
Sbjct: 483 PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKH 542
Query: 252 ADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTN 431
A + I KPGK SYRPISLL D S + QFGFR +
Sbjct: 543 ASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFGFRKD 602
Query: 432 HSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLV 611
H Q+ R+T+ IL + A F D+ +AFD+VWH+GL++KL R L
Sbjct: 603 HGAEHQLARVTQFILKAFDEKD--VCSATFLDITEAFDRVWHDGLLYKLSR--LIPRYLF 658
Query: 612 LIIRDFLSNRSFRYRVEGTRSS 677
++ ++LSNR+F R++G +S
Sbjct: 659 DLLENYLSNRTFSVRIDGETTS 680
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 126 bits (304), Expect = 3e-29
Identities = 73/202 (36%), Positives = 104/202 (51%)
Frame = +3
Query: 72 PVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKE 251
PVT E+ LI L +KAPG+D ++N+ I LP + + L I+N + FP WK
Sbjct: 483 PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKH 542
Query: 252 ADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTN 431
A + I KPGK SYRPISLL D S + QFGFR +
Sbjct: 543 ASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKRLYDIDSFAKAIPSHQFGFRKD 602
Query: 432 HSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLV 611
H Q+ R+T+ IL + A F D+ +AFD+VWH+GL++KL R L
Sbjct: 603 HGAEHQLARVTQFILKAFDEKD--VCSATFLDITEAFDRVWHDGLLYKLSR--LIPRYLF 658
Query: 612 LIIRDFLSNRSFRYRVEGTRSS 677
++ ++LSNR+F R++G +S
Sbjct: 659 DLLENYLSNRTFSVRIDGETTS 680
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 124 bits (299), Expect = 1e-28
Identities = 71/199 (35%), Positives = 106/199 (53%), Gaps = 1/199 (0%)
Frame = +3
Query: 81 PIEVKDLIKD-LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEAD 257
P E+ +IK+ L PRK+PG D I+ R++ LP I+ + +FNA FP WK++
Sbjct: 433 PCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFPQKWKKST 492
Query: 258 VIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTNHS 437
++ I KPGK K P+SYRPISLL + L QFGFR H
Sbjct: 493 IVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTHQFGFREKHG 552
Query: 438 CVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLVLI 617
++QV+R+T I + Y A+F DVA+AFD+VW +GL+FK+ + + +
Sbjct: 553 TIEQVNRITSEIRTAFEHRE--YCTAIFLDVAQAFDRVWLDGLLFKIIK--LLPQNTHKL 608
Query: 618 IRDFLSNRSFRYRVEGTRS 674
++ +L NR F R + + S
Sbjct: 609 LKSYLYNRVFAIRCDTSTS 627
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p protein.
Length = 888
Score = 122 bits (293), Expect = 6e-28
Identities = 70/199 (35%), Positives = 105/199 (52%), Gaps = 1/199 (0%)
Frame = +3
Query: 81 PIEVKDLIKD-LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEAD 257
P E+ +IK+ L PRK+PG D I+ R++ LP I+ + +FNA FP WK++
Sbjct: 433 PCELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFPQKWKKST 492
Query: 258 VIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTNHS 437
++ I KPGK K P+SYRPISLL + L QFGFR H
Sbjct: 493 IVMIPKPGKDKTQPSSYRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTHQFGFREKHG 552
Query: 438 CVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLVLI 617
++QV+R+T I + Y A+F DVA+AFD+VW +GL+FK+ + + +
Sbjct: 553 TIEQVNRITSEIRTAFEHRE--YCTAIFLDVAQAFDRVWLDGLLFKIIK--LLPQNTHKL 608
Query: 618 IRDFLSNRSFRYRVEGTRS 674
++ +L N F R + + S
Sbjct: 609 LKSYLYNTVFAIRCDTSTS 627
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 114 bits (274), Expect = 1e-25
Identities = 69/203 (33%), Positives = 103/203 (50%)
Frame = +3
Query: 75 VTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEA 254
VT EV ++K L RK+PG DGI N +K LP I + +I N + FP WK A
Sbjct: 461 VTYPEVFSIVKALHTRKSPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIA 520
Query: 255 DVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTNH 434
++ I KPGKP ++P SYRPISLL F+ L Q+GFR
Sbjct: 521 KIVPILKPGKPPDNPESYRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYGFRNGL 580
Query: 435 SCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLVL 614
+ + +L +I + + + G + D+ AFD VWH+GL+ KL G L+
Sbjct: 581 NTILPTLKLRNYIKESIQSKQSV--GLVTLDIEAAFDTVWHDGLLHKLKMIG-TPIYLIK 637
Query: 615 IIRDFLSNRSFRYRVEGTRSSPR 683
I+++FL++R F + ++S+ R
Sbjct: 638 IVQNFLTHRYFSVNLNSSQSARR 660
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 114 bits (274), Expect = 1e-25
Identities = 69/203 (33%), Positives = 103/203 (50%)
Frame = +3
Query: 75 VTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEA 254
VT EV ++K L RK+PG DGI N +K LP I + +I N + FP WK A
Sbjct: 409 VTYPEVFSIVKALHTRKSPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIA 468
Query: 255 DVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTNH 434
++ I KPGKP ++P SYRPISLL F+ L Q+GFR
Sbjct: 469 KIVPILKPGKPPDNPESYRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYGFRNGL 528
Query: 435 SCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLVL 614
+ + +L +I + + + G + D+ AFD VWH+GL+ KL G L+
Sbjct: 529 NTILPTLKLRNYIKESIQSKQSV--GLVTLDIEAAFDTVWHDGLLHKLKMIG-TPIYLIK 585
Query: 615 IIRDFLSNRSFRYRVEGTRSSPR 683
I+++FL++R F + ++S+ R
Sbjct: 586 IVQNFLTHRYFSVNLNSSQSARR 608
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding protein,
3' end. ).
Length = 858
Score = 112 bits (269), Expect = 5e-25
Identities = 73/214 (34%), Positives = 106/214 (49%), Gaps = 2/214 (0%)
Frame = +3
Query: 42 PPCHHRDALPPV-TPIEVKDLIKD-LRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAA 215
P H+ P V P E+ +IKD L P+K+PG D I+ +I LP + + +FNA
Sbjct: 421 PVNRHQQHTPIVFRPKEITKIIKDNLSPKKSPGYDLITPEMIIQLPHSAVRYITKLFNAI 480
Query: 216 MANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKG 395
FP WK +I I KPGK +SYRPISLL +
Sbjct: 481 TKLGYFPQRWKMMKIIMIPKPGKNHTVASSYRPISLLSCISKLFEKCLLIRLNQHQTYHN 540
Query: 396 ILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFK 575
I+ QFGFR +H ++QV+R+T I + Y A+F DV++AFDKVW +GL+FK
Sbjct: 541 IIPAHQFGFRESHGTIEQVNRITTEIRTAFEYRE--YCTAVFLDVSQAFDKVWLDGLMFK 598
Query: 576 LFRWGRCRDSLVLIIRDFLSNRSFRYRVEGTRSS 677
+ +S +++ +L +R F R S+
Sbjct: 599 IKI--SLPESTHKLLKSYLYDRKFAVRCNTATST 630
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 95.9 bits (228), Expect = 5e-20
Identities = 59/200 (29%), Positives = 97/200 (48%)
Frame = +3
Query: 78 TPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEAD 257
T +E+++ + + K+PG+D +S ++K L L L IFN + +P W+ A
Sbjct: 438 TLLEIENSVAKAKG-KSPGADRVSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAI 496
Query: 258 VIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTNHS 437
+I I KP KP + SYRPISLL F+ ++ Q F++NHS
Sbjct: 497 IIPISKPNKPPSDINSYRPISLLSCLGKTLEKIIAQRLTWFIKRHNLISHNQVAFKSNHS 556
Query: 438 CVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLVLI 617
+ + R+ L+ + L D +AFD+V + ++ +L RWG L +
Sbjct: 557 TMDALLRIQHFASNALSTKN--HVSILATDFERAFDRVGIHAVLCRLERWG-IGPRLYNL 613
Query: 618 IRDFLSNRSFRYRVEGTRSS 677
I+ F++NRSFR R+ S+
Sbjct: 614 IKAFMTNRSFRVRINNVTSN 633
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 93.5 bits (222), Expect = 2e-19
Identities = 56/170 (32%), Positives = 84/170 (49%)
Frame = +3
Query: 168 LPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSXXXXX 347
LP+ ++ + +FNA FP WK++ +I I KP K K P SYRPISLL
Sbjct: 5 LPMCAVMRICLLFNAITKIGYFPQKWKKSIIIMIPKPEKDKTQP-SYRPISLLTCLSKLF 63
Query: 348 XXXXXXXXXDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFD 527
+ + L QF F H ++QV+R+T I + Y ALF D
Sbjct: 64 EKGLLLRISPHLKTHNTLPSYQFDFPAKHGAIEQVNRITTEIRTAFEHRE--YCTALFLD 121
Query: 528 VAKAFDKVWHNGLIFKLFRWGRCRDSLVLIIRDFLSNRSFRYRVEGTRSS 677
VA+AFD+VW +GL+FK+ + ++ +++ +L R F R + SS
Sbjct: 122 VAQAFDRVWLDGLMFKIIQ--LLPQNIHKLLKSYLDKRVFAVRCSSSTSS 169
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 68.5 bits (160), Expect = 8e-12
Identities = 54/204 (26%), Positives = 93/204 (45%)
Frame = +3
Query: 75 VTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEA 254
+T +E+ ++ L+ APG + IS ++IK + +FN N P +K +
Sbjct: 433 ITYLELSSALQTLKGC-APGLNRISYQMIKNSSHTTKNRITKLFNEIF-NSHIPQAYKTS 490
Query: 255 DVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTNH 434
+I I KP K +SYRPISL V+ ++ D+QFGF+
Sbjct: 491 LIIPILKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRLWWLVTYNNLINDKQFGFKKGK 550
Query: 435 SCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLVL 614
S ++++ ++T + D ++AFD+V + +I +L W + ++
Sbjct: 551 S-TSDCLLYVDYLIT----KSKMHTSLVTLDFSRAFDRVGVHSIIQQLQEW-KTGPKIIK 604
Query: 615 IIRDFLSNRSFRYRVEGTRSSPRP 686
I++F+SNR RV SSP P
Sbjct: 605 YIKNFMSNRKITVRVGPHTSSPLP 628
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 65.3 bits (152), Expect = 7e-11
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 5/164 (3%)
Frame = +3
Query: 69 PPVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWK 248
P +T EV + K +RP KAPG DGI ++K + F + + +FP WK
Sbjct: 400 PCITSCEVVEAAKRIRPNKAPGIDGIPGVIVKAAATARPEVFRDTFQQCLLDGVFPKRWK 459
Query: 249 EADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRT 428
+ ++ + K P N P SYRP+ LL S L +Q+GFR
Sbjct: 460 KMKLVLLLKGKGPANVPRSYRPLCLLDIVGKLFERILYARIELITESPTGLQGQQYGFRK 519
Query: 429 NHSCVQQVHRLTEHILVGLNRPKPL-----YTGALFFDVAKAFD 545
S + + +T+ L+ + L Y + DV AF+
Sbjct: 520 GKSTLDALKSVTDAARKALDGNRWLGGSKKYCAIITLDVKNAFN 563
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 62.9 bits (146), Expect = 4e-10
Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 2/183 (1%)
Frame = +3
Query: 60 DALPPVTPI-EVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFP 236
+ +PP + EV + L+ R++PG DGI+ + K + + LAS+F+ + FP
Sbjct: 428 EEVPPALEVFEVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFP 487
Query: 237 AVWKEADVIGIHK-PGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQ 413
A WK V+ + K P K K P+SYR I LL + V +G Q
Sbjct: 488 AEWKCPRVVSLLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVRE-VLPEG--CRWQ 544
Query: 414 FGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFRWGR 593
FGFR CV+ R H+ + Y F D AFD V + + +L G
Sbjct: 545 FGFRQGR-CVEDAWR---HVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLG- 599
Query: 594 CRD 602
CR+
Sbjct: 600 CRE 602
>AY121617-1|AAM51944.1| 620|Drosophila melanogaster GH03958p
protein.
Length = 620
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -1
Query: 220 AIAALKIDANITMSWTGRSLITRLDIPSEPGALRGRRSLIKSLTSIGVTGGNASR 56
AIA ++ + N + GR L L + + P A +R L+KS + G++ SR
Sbjct: 368 AIANMQTNPNYATLFRGRPLRFVLPLGTIPPASIAKRGLVKSFSLAGLSAPQVSR 422
>AJ276682-1|CAB93141.1| 620|Drosophila melanogaster 15,15' beta
carotene dioxygenase protein.
Length = 620
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -1
Query: 220 AIAALKIDANITMSWTGRSLITRLDIPSEPGALRGRRSLIKSLTSIGVTGGNASR 56
AIA ++ + N + GR L L + + P A +R L+KS + G++ SR
Sbjct: 368 AIANMQTNPNYATLFRGRPLRFVLPLGTIPPASIAKRGLVKSFSLAGLSAPQVSR 422
>AE014297-1742|AAF54978.1| 620|Drosophila melanogaster CG9347-PA
protein.
Length = 620
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -1
Query: 220 AIAALKIDANITMSWTGRSLITRLDIPSEPGALRGRRSLIKSLTSIGVTGGNASR 56
AIA ++ + N + GR L L + + P A +R L+KS + G++ SR
Sbjct: 368 AIANMQTNPNYATLFRGRPLRFVLPLGTIPPASIAKRGLVKSFSLAGLSAPQVSR 422
>AB041507-1|BAA94508.1| 620|Drosophila melanogaster DRPE65 protein.
Length = 620
Score = 28.7 bits (61), Expect = 7.9
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -1
Query: 220 AIAALKIDANITMSWTGRSLITRLDIPSEPGALRGRRSLIKSLTSIGVTGGNASR 56
AIA ++ + N + GR L L + + P A +R L+KS + G++ SR
Sbjct: 368 AIANMQTNPNYATLFRGRPLRFVLPLGTIPPASIAKRGLVKSFSLAGLSAPQVSR 422
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,971,245
Number of Sequences: 53049
Number of extensions: 703073
Number of successful extensions: 2196
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 2068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2151
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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