Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3748
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    79   2e-15
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    59   3e-09
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    59   3e-09
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    56   3e-08
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    33   0.14 
AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical...    28   7.2  
AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical...    28   7.2  
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    28   7.2  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 59/193 (30%), Positives = 87/193 (45%), Gaps = 1/193 (0%)
 Frame = +3

Query: 75  VTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEA 254
           +T IE+ ++   + P  A G DGI+   I+ LP+     LA ++N +++  I P  WK+A
Sbjct: 328 ITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKA 387

Query: 255 DVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTNH 434
           +VI I KP K     +SYRPISLL                + + S       Q GF+  H
Sbjct: 388 NVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIESPA----HQHGFKPEH 443

Query: 435 SCVQQVHRLTEHILVGLNRPKPLYTGAL-FFDVAKAFDKVWHNGLIFKLFRWGRCRDSLV 611
           S    V ++T  I+ GLN   P     +   D+  AFDKV    L   L         + 
Sbjct: 444 STTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAAFDKVPTKKLCNDLMEAQGIEPKIK 503

Query: 612 LIIRDFLSNRSFR 650
           L + ++L  R  R
Sbjct: 504 LWLGNYLHKRLIR 516


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 47/166 (28%), Positives = 69/166 (41%)
 Frame = +3

Query: 69   PPVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWK 248
            PP  P E++ +++     KA G D IS   +K     +I ++   FN  + +   P  WK
Sbjct: 545  PPFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWK 604

Query: 249  EADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRT 428
             +    I K G  +N   +YRPI LL                  +     +  EQ GFR 
Sbjct: 605  TSKTTLIFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRR 661

Query: 429  NHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGL 566
            + S +  +H L   + VG     PL    +F D  KAFD V H  +
Sbjct: 662  SFSTIDHIHSLQRLLEVGREYQIPL--TLVFIDFKKAFDSVEHQAI 705


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 47/166 (28%), Positives = 69/166 (41%)
 Frame = +3

Query: 69  PPVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWK 248
           PP  P E++ +++     KA G D IS   +K     +I ++   FN  + +   P  WK
Sbjct: 284 PPFLPEEIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWK 343

Query: 249 EADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRT 428
            +    I K G  +N   +YRPI LL                  +     +  EQ GFR 
Sbjct: 344 TSKTTLIFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRR 400

Query: 429 NHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGL 566
           + S +  +H L   + VG     PL    +F D  KAFD V H  +
Sbjct: 401 SFSTIDHIHSLQRLLEVGREYQIPL--TLVFIDFKKAFDSVEHQAI 444


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 46/166 (27%), Positives = 68/166 (40%)
 Frame = +3

Query: 69  PPVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWK 248
           PP  P +++  ++     KA G D IS   +K     +I ++   FN  + +   P  WK
Sbjct: 374 PPFLPEKIRYALRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWK 433

Query: 249 EADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRT 428
            +    I K G  +N   +YRPI LL                  +     +  EQ GFR 
Sbjct: 434 TSKTTLIFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRR 490

Query: 429 NHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGL 566
           + S +  +H L   + VG     PL    +F D  KAFD V H  +
Sbjct: 491 SFSTIDHIHSLQRLLEVGREYQIPL--TLVFIDFKKAFDTVEHQAI 534


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 23/54 (42%), Positives = 36/54 (66%)
 Frame = +3

Query: 516 LFFDVAKAFDKVWHNGLIFKLFRWGRCRDSLVLIIRDFLSNRSFRYRVEGTRSS 677
           ++ D +KAFD++ H+ L+ KL    R   +L++ + +FLSNRSFR R+  T SS
Sbjct: 17  IYLDFSKAFDRLPHDLLLDKLVSL-RKNKNLLIWVNEFLSNRSFRVRIGQTLSS 69


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 23/80 (28%), Positives = 34/80 (42%)
 Frame = +3

Query: 42  PPCHHRDALPPVTPIEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMA 221
           PP    + LPP    E++  I      KA GSD I+   +K     +I ++   FN  + 
Sbjct: 385 PPPIMAEPLPPFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLE 444

Query: 222 NCIFPAVWKEADVIGIHKPG 281
           +   P  WK +    I K G
Sbjct: 445 SGNIPKDWKTSKTTLIFKKG 464


>AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15a protein.
          Length = 933

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 69  PPVTPIEVKDLIKDLRPRKAPGSDGISNR 155
           PP  P ++++LI+D+  R +PG + +++R
Sbjct: 873 PPELPDQLRNLIEDVARRASPGPEQMNDR 901


>AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15b protein.
          Length = 832

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 69  PPVTPIEVKDLIKDLRPRKAPGSDGISNR 155
           PP  P ++++LI+D+  R +PG + +++R
Sbjct: 772 PPELPDQLRNLIEDVARRASPGPEQMNDR 800


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 647  KRAVRQEVPYDEHETIPAPPPSE*FENQTIVPD 549
            +R+  Q+V Y+    +  P PS  FE  + VPD
Sbjct: 2607 ERSFDQDVTYERSSPLLIPTPSSSFEQASTVPD 2639


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,264,654
Number of Sequences: 27780
Number of extensions: 341788
Number of successful extensions: 919
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)