Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3746
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.2  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    27   2.8  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.6  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   8.7  

>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 236 YFGYEGKRIIFLNRLNILTTYITFLFQYNLAL 331
           Y  Y+G+RI F N    +  Y  FL+ +N+ L
Sbjct: 150 YIKYQGRRIRFFNSEPFMEKYGQFLWAHNIEL 181


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
 Frame = +1

Query: 463 SLLVWTCFFGYHL-NRL*KHGL----SKICLIIHII 555
           SLLVW  +FGY +  R+ K+ L     K+CL+  I+
Sbjct: 42  SLLVWNFYFGYRVFYRISKYSLIDLTYKLCLLCGIV 77


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 192 PEKGVTHLAVAAIINSLWDLWARIE 118
           P+K  TH  VA I+N  WD + + E
Sbjct: 330 PKKRSTHSYVAKILNPEWDAFLKNE 354


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 437 EVIRFLY*EIPLAFKLYQKV*FHYISQLAAM*KCKIVQDYIETEKLYKL 291
           E+  FL   + L  + YQK+ F Y+SQL A  K  + +   E+   YKL
Sbjct: 259 ELQLFLIELLSLNSRFYQKIAFAYLSQLDAHLKRCLKES--ESSDAYKL 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,836
Number of Sequences: 5004
Number of extensions: 60828
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)