Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3746
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0714 - 23814826-23814997,23815080-23815164,23815680-238157...    28   6.8  

>06_03_0714 -
           23814826-23814997,23815080-23815164,23815680-23815791,
           23817203-23817304,23817375-23817447,23817918-23817997,
           23818076-23818267,23818945-23819064,23819157-23819244,
           23819319-23819353,23819447-23819518,23819860-23819931,
           23820054-23821189,23822011-23822362
          Length = 896

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 35  VNTKKNIVH*LFLPQGSMSD-KSRHSGLFSILAHKS 139
           +NT K +V    +PQGS+S  +S+   LFS + H +
Sbjct: 327 LNTPKAVVQTFQIPQGSISSLRSKRRQLFSPITHSA 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,146,781
Number of Sequences: 37544
Number of extensions: 326759
Number of successful extensions: 597
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)