Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3746
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99942-8|CAC70091.2|  439|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z99942-2|CAB17072.1|  468|Caenorhabditis elegans Hypothetical pr...    31   0.86 
AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical ...    28   4.6  
U13644-7|AAM48536.2|  700|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U13644-6|AAB52678.1|  739|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AJ505020-1|CAD43602.1|  382|Caenorhabditis elegans alpha-1->3-fu...    27   8.1  
AC006674-5|AAF39933.2|  382|Caenorhabditis elegans Fucosyl trans...    27   8.1  

>Z99942-8|CAC70091.2|  439|Caenorhabditis elegans Hypothetical
           protein H13N06.3b protein.
          Length = 439

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 325 KIILKQKSYISCQNIQSVKKNNSFAFIAKICPLYLLMKFYFTDRSR 188
           K + K   ++    ++S K+NNSFA + K+C L  L+  +  D  R
Sbjct: 87  KGLQKDHHFLDAFAVESDKENNSFANVLKLCDLPGLLSKFVDDEIR 132


>Z99942-2|CAB17072.1|  468|Caenorhabditis elegans Hypothetical
           protein H13N06.3a protein.
          Length = 468

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 325 KIILKQKSYISCQNIQSVKKNNSFAFIAKICPLYLLMKFYFTDRSR 188
           K + K   ++    ++S K+NNSFA + K+C L  L+  +  D  R
Sbjct: 116 KGLQKDHHFLDAFAVESDKENNSFANVLKLCDLPGLLSKFVDDEIR 161


>AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical
           protein Y50D7A.1 protein.
          Length = 791

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -2

Query: 421 YIKRFH-WRSNYIKKC-DFITSHNLQLCENAK*CKIILKQKSYISCQNIQSVKKNNS--F 254
           + +RF  +   + K+   F  + N+   EN++     +++K+ +   NIQ   K  S  F
Sbjct: 555 FFERFEKFTKKFFKRIFTFFYNQNVLFTENSQKRNHKIRKKNALKTSNIQIFSKIASFFF 614

Query: 253 AFIAKICPLYLLMKFYF 203
            F +  C  Y  +K +F
Sbjct: 615 EFFSDFCDSYSCLKIFF 631


>U13644-7|AAM48536.2|  700|Caenorhabditis elegans Hypothetical
           protein F56D2.6b protein.
          Length = 700

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 150 NSLWDLWARIENKPLWRLLSDMDPCGRNNQC 58
           N  W +W +    P+W          RNNQC
Sbjct: 64  NRYWAIWEKRSQLPVWEYKEKFMELLRNNQC 94


>U13644-6|AAB52678.1|  739|Caenorhabditis elegans Hypothetical
           protein F56D2.6a protein.
          Length = 739

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 150 NSLWDLWARIENKPLWRLLSDMDPCGRNNQC 58
           N  W +W +    P+W          RNNQC
Sbjct: 64  NRYWAIWEKRSQLPVWEYKEKFMELLRNNQC 94


>AJ505020-1|CAD43602.1|  382|Caenorhabditis elegans
           alpha-1->3-fucosyltransferase homologueprotein.
          Length = 382

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 427 DFYIKRFHWRSNYIKKCDFITSHNLQLCENAK*CKIILKQKSYISCQN 284
           DFY+K   WR +Y    D   S   +LCE  +   +IL+ + +    N
Sbjct: 316 DFYLKFHEWRKDYRVIFDNGFSGWCRLCERLQDENLILENRKFYKNAN 363


>AC006674-5|AAF39933.2|  382|Caenorhabditis elegans Fucosyl
           transferase protein 4 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 427 DFYIKRFHWRSNYIKKCDFITSHNLQLCENAK*CKIILKQKSYISCQN 284
           DFY+K   WR +Y    D   S   +LCE  +   +IL+ + +    N
Sbjct: 316 DFYLKFHEWRKDYRVIFDNGFSGWCRLCERLQDENLILENRKFYKNAN 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,141,239
Number of Sequences: 27780
Number of extensions: 335742
Number of successful extensions: 717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)