Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3745
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.1  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    26   3.7  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    25   4.9  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    25   4.9  
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    25   8.6  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    25   8.6  

>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 100 FALGSFCLYILCCFVFTRRFQ*NDFQFRIFVAC 198
           F   +FC   L C  F   ++  DF FR    C
Sbjct: 8   FIFATFCPCFLSCCAFMSHWKLKDFSFRFLRMC 40


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 78  KQFLNCVIDLLNWFEIDRLFAPR 10
           K+ +NC   L + FE DRL+ PR
Sbjct: 245 KRLINCDKALRDLFEADRLYFPR 267


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 153 SLSVK*FSIQNFCRLCPCICESVNNYHK 236
           +L  K  S  NFC L  C  + VN  HK
Sbjct: 430 NLEAKTVSPSNFCALEVCALQFVNGVHK 457


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -2

Query: 158 KRRVNTK---QHKIYKQNDPNANLFTRNSQNNS 69
           KRR+ T+    +KI  +ND  ++ F RNSQ+ S
Sbjct: 174 KRRMETETKEMNKIKPKNDSESDRFKRNSQSLS 206


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 404 DTTGIPLHYSRGWLNWSC 457
           D +  PLH +  W++W C
Sbjct: 29  DLSSSPLHENVSWISWFC 46


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 29  SISNQFNKSITQFKNCFASFV*TNLR 106
           ++SN+FN S   FK C  S   +NLR
Sbjct: 10  NVSNEFNFSFQSFKECVLSHG-SNLR 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,878
Number of Sequences: 5004
Number of extensions: 36434
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)