Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3745
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z81062-1|CAB02945.2|  365|Caenorhabditis elegans Hypothetical pr...    32   0.21 
AL033512-3|CAA22077.1|  243|Caenorhabditis elegans Hypothetical ...    29   1.5  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +3

Query: 426 IIVGAGSTGAVLANRLSKIGYWKILLL 506
           IIVGAGS G VLANRL++    ++LL+
Sbjct: 41  IIVGAGSAGCVLANRLTEDPSNRVLLI 67


>Z81062-1|CAB02945.2|  365|Caenorhabditis elegans Hypothetical
           protein F15A4.1 protein.
          Length = 365

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 116 FVYIFCVVLCSHVAFSEMIFNSEFLSLVPVY 208
           F+Y+  V++CS + FS   + +E+L L+P Y
Sbjct: 293 FIYLNPVIICSTLMFSAPAWRAEYLKLIPGY 323


>AL033512-3|CAA22077.1|  243|Caenorhabditis elegans Hypothetical
           protein Y49A3A.4 protein.
          Length = 243

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/70 (30%), Positives = 29/70 (41%)
 Frame = +3

Query: 117 LFIYFVLFCVHTSLSVK*FSIQNFCRLCPCICESVNNYHKMSAIVNAAADVLSGTAIAAA 296
           LF+   L  +HT LS K     + CRL    C S N   +   ++  A  +  G  I + 
Sbjct: 4   LFLSISLVFIHTVLSEKCADAHHDCRLIAVKCLSPNRIEQ--KLMEIACPLTCGYCINSK 61

Query: 297 TGSQVAWFVP 326
           TG      VP
Sbjct: 62  TGGTTTSTVP 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,865,384
Number of Sequences: 27780
Number of extensions: 211327
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)