Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3744
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370...    29   3.9  
09_03_0070 - 12066788-12067474                                         28   6.9  

>05_03_0369 -
           13136146-13136175,13136237-13136908,13136926-13137016,
           13137184-13137416,13137459-13137731,13137877-13138265,
           13138325-13139156,13139847-13139922,13140027-13140414,
           13141395-13141748,13142069-13142333,13143366-13143716
          Length = 1317

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 326 RCRISYTHHSLLQEQSDLRMKNEENHNTIHIEKEVSLHSRV 448
           RC ++Y     +QE S ++ +NE +H  IH++  +   SR+
Sbjct: 743 RCLVAYPRRRKIQELSSVQKENEASH--IHMQNVMDAISRL 781


>09_03_0070 - 12066788-12067474
          Length = 228

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +2

Query: 326 RCRISYTHHSLLQEQSDLRMKNEEN----HNTIHIEKEVSLHSRVPSCTRTVFLRY 481
           RCRI+     +  E S+  + ++ +     N +H +  V LH+  P C   V L Y
Sbjct: 18  RCRIALAEKGVEYEYSEQSLADKSDLLLRSNPVHKKVPVLLHAGRPVCESLVILEY 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,711,170
Number of Sequences: 37544
Number of extensions: 235514
Number of successful extensions: 451
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)