Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3744
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-20|CAA21612.2|  250|Caenorhabditis elegans Hypothetical...    32   0.38 
Z83109-10|CAB05520.2|  435|Caenorhabditis elegans Hypothetical p...    28   4.7  
AF000263-17|AAG00013.1|  179|Caenorhabditis elegans Hypothetical...    28   6.2  
Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z68302-1|CAA92634.2|  382|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AL032637-20|CAA21612.2|  250|Caenorhabditis elegans Hypothetical
           protein Y43F8C.10 protein.
          Length = 250

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 320 C*RCRISYTHHSLLQEQSDLRMKNEENHNTIHIEKEVSL-HSRVPSCTRTV 469
           C +C++      L+ +Q  LR + +   N ++ E+E  + HS  PS   TV
Sbjct: 143 CAKCQVVVERQKLMADQIKLRRRQKREKNNLNSEREAPIAHSMTPSPIDTV 193


>Z83109-10|CAB05520.2|  435|Caenorhabditis elegans Hypothetical
           protein F44G3.8 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 401 GFLHFSSLNQIALVIGNGV---YKRCDIFNIS 315
           GFL FS +N+I  V G G+   Y+ C I+  S
Sbjct: 384 GFLGFSIVNEIKTVFGQGIGDAYRSCIIYKSS 415


>AF000263-17|AAG00013.1|  179|Caenorhabditis elegans Hypothetical
           protein T08B2.3 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 470 KRCACNLVHVNEVKLLFRCVLYCGFLHFSSLNQ 372
           +RC   L     + L   C L  G  HFS+LNQ
Sbjct: 128 QRCDVKLTSYKNILLKLLCRLLTGSSHFSNLNQ 160


>Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical
           protein AC3.8 protein.
          Length = 531

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 49  ICVFIFLSII*NILVYNILATRPRFASETLK 141
           + VF+F ++  N+L YN L   P F    +K
Sbjct: 5   LLVFLFFALYCNVLAYNYLVVAPVFGYSHMK 35


>Z68302-1|CAA92634.2|  382|Caenorhabditis elegans Hypothetical
           protein ZK792.3 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = +2

Query: 32  VLNKKIYVYLFFYL*FKIYSYII 100
           V N+KI+++L+F+L F I+S ++
Sbjct: 265 VFNEKIFLFLWFWLLFLIFSTLV 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,714,008
Number of Sequences: 27780
Number of extensions: 240939
Number of successful extensions: 543
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)