Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3740
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical pr...    31   0.72 
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    29   1.7  
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    28   3.9  
Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical p...    27   6.7  
AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor tyro...    27   6.7  
AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor tyro...    27   6.7  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    27   8.9  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    27   8.9  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    27   8.9  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    27   8.9  

>Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical
           protein F45E6.4 protein.
          Length = 333

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 448 CPSVNSFKFQLCNHTPPGVQNLWFPGSCPPSHCSN 344
           CP  ++F F  C     G++  +FPG+CP   CS+
Sbjct: 203 CPCQHAFAFPAC-----GMETGFFPGTCPEMTCSS 232


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 510 SGPGEISRVESN*AAGSTPGG-ALPSIPLSFSFATILPPESKIFGFPEAARRAI 352
           S P  + R  S  +  +TP G A P  PLS S +    P+S   G P + +R++
Sbjct: 521 STPRSVVRTTSTSSVPTTPTGLAAPKTPLSASVSATNEPDSTTNGTPLSRKRSM 574


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 450 HQEWSLRLNLTQHGKSHQARTPGR 521
           H +W ++ NL +HG ++ A  P R
Sbjct: 696 HMDWHVKQNLARHGSNNSAAVPYR 719


>Z47808-12|CAB61003.1|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 371 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 508
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 481 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 530


>Z47808-11|CAD36487.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 371 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 508
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 507 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 556


>Z35595-13|CAA84639.2|  902|Caenorhabditis elegans Hypothetical
           protein C01G6.8b protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 371 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 508
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 481 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 530


>Z35595-12|CAD36478.1|  928|Caenorhabditis elegans Hypothetical
           protein C01G6.8a protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 371 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 508
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 507 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 556


>Z35595-11|CAJ34992.1|  769|Caenorhabditis elegans Hypothetical
           protein C01G6.8c protein.
          Length = 769

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 371 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 508
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 348 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 397


>AJ132947-1|CAC29085.1|  902|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 902

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 371 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 508
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 481 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 530


>AJ132946-1|CAC29084.1|  928|Caenorhabditis elegans receptor
           tyrosine kinase protein.
          Length = 928

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = +2

Query: 371 SGKPKILDSGGSMVAKLKLKG----IDGRAPPGVEPAA*FDSTREISPGP 508
           S  P +++S  +     KL G    I GR PP VE  +   S + + P P
Sbjct: 507 SSAPSVINSAANSAYYRKLNGTSTPIMGRVPPHVEMTSLLPSAQHLGPPP 556


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
           protein K07E12.1b protein.
          Length = 12268

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
 Frame = +3

Query: 252 FINQERKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPGNQRFWTP------GGVWL 413
           ++N     E+R    TA  +  N++ +DP  +L WL    P N+   T       GGV L
Sbjct: 433 YVNIVEGDEIRVPPMTAFEIDCNVTRADPVPVLVWLHKGRPLNKGSKTQHIKMKNGGV-L 491

Query: 414 QS*NLKELTEGHHQEWSLRLNLTQHGKSHQARTPGRID 527
           +S     + E    + + ++N+T  G S   R   +ID
Sbjct: 492 ESTQFSCVAENEAGKSTKKINVTVTGPSAPERIRYQID 529


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
           protein K07E12.1a protein.
          Length = 13100

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
 Frame = +3

Query: 252 FINQERKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPGNQRFWTP------GGVWL 413
           ++N     E+R    TA  +  N++ +DP  +L WL    P N+   T       GGV L
Sbjct: 496 YVNIVEGDEIRVPPMTAFEIDCNVTRADPVPVLVWLHKGRPLNKGSKTQHIKMKNGGV-L 554

Query: 414 QS*NLKELTEGHHQEWSLRLNLTQHGKSHQARTPGRID 527
           +S     + E    + + ++N+T  G S   R   +ID
Sbjct: 555 ESTQFSCVAENEAGKSTKKINVTVTGPSAPERIRYQID 592


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
           protein.
          Length = 13100

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
 Frame = +3

Query: 252 FINQERKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPGNQRFWTP------GGVWL 413
           ++N     E+R    TA  +  N++ +DP  +L WL    P N+   T       GGV L
Sbjct: 496 YVNIVEGDEIRVPPMTAFEIDCNVTRADPVPVLVWLHKGRPLNKGSKTQHIKMKNGGV-L 554

Query: 414 QS*NLKELTEGHHQEWSLRLNLTQHGKSHQARTPGRID 527
           +S     + E    + + ++N+T  G S   R   +ID
Sbjct: 555 ESTQFSCVAENEAGKSTKKINVTVTGPSAPERIRYQID 592


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 203 LDRRKTNISESICQRCFHQSRTKVRGS 283
           L+     +S  ICQ CFHQ   K++G+
Sbjct: 331 LEPTHEELSYMICQLCFHQVGKKLQGN 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,844,847
Number of Sequences: 27780
Number of extensions: 273735
Number of successful extensions: 682
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)