Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3737
         (498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical...    31   0.46 
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    30   0.81 
U50198-3|AAA91261.2|  503|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical ...    29   1.9  
U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U46753-7|AAA85763.2|  223|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z74472-8|CAD54135.1|   75|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical ...    27   5.7  
AF106574-1|AAY44015.1|  317|Caenorhabditis elegans Hypothetical ...    27   5.7  
AC006611-4|AAK85456.2|  328|Caenorhabditis elegans Hypothetical ...    27   7.6  
Z69903-1|CAA93772.1|  137|Caenorhabditis elegans Hypothetical pr...    27   10.0 
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    27   10.0 

>AC025721-11|AAK29900.1|   78|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.12 protein.
          Length = 78

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 19/52 (36%), Positives = 21/52 (40%)
 Frame = +3

Query: 336 SAGDRFGRTDAASPQQVPAAALPPGYAYFAYQPPPTTYQYGVYPTYGGVRAG 491
           SAG   G     +P   PA A PP  A     PPP  Y     P+YG    G
Sbjct: 21  SAGGGGGGCGCGAPPPPPACAPPPAPACGGGAPPPPAYA-APAPSYGAPAGG 71


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
 Frame = -3

Query: 493 PPARTPPYVGYTPYWYVVGGGW---YAKYAY---PGGRAAAGTCCGEAASVRPNLSPALS 332
           P    PP   Y PY Y    G+   Y  Y+Y       AA G   G A +     +PA +
Sbjct: 215 PACAQPPCPAYNPYGYQGTPGYAPAYNPYSYVLRSPVAAAPGYAQGYAPAYAQGYAPAYA 274

Query: 331 PK-APSRAP*P 302
           P  AP+ AP P
Sbjct: 275 PSYAPAYAPSP 285


>U50198-3|AAA91261.2|  503|Caenorhabditis elegans Hypothetical
           protein R04B3.3 protein.
          Length = 503

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 387 PAAALPPGYAYFAYQPPPTTYQYGVYPTYGGVRA 488
           P     PGY  + Y PP  ++ YG +P  G  RA
Sbjct: 23  PFFGYSPGYGGY-YAPPAASFNYGPFPRVGPFRA 55


>Z81086-9|CAD30440.1|   75|Caenorhabditis elegans Hypothetical
           protein F53B6.9 protein.
          Length = 75

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 270 HPHHMGGYYEVGYGARDGAFG 332
           H HH GGYY  GYG     +G
Sbjct: 35  HHHHHGGYYGGGYGGYQPYYG 55


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 270 HPHHMGGYYEV--GYGARDGAFGLSAGDRFGRTDAASPQQVPAAALPPGYAY 419
           +P++   Y  V  G+GA  G +G S G + G ++ ++   +PA A P  Y+Y
Sbjct: 228 NPNNSSNYNSVPTGFGASSGGYGGSGGFK-GHSNGSA---IPAQAPPTSYSY 275


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 270 HPHHMGGYYEV--GYGARDGAFGLSAGDRFGRTDAASPQQVPAAALPPGYAY 419
           +P++   Y  V  G+GA  G +G S G + G ++ ++   +PA A P  Y+Y
Sbjct: 228 NPNNSSNYNSVPTGFGASSGGYGGSGGFK-GHSNGSA---IPAQAPPTSYSY 275


>AC024089-1|AAK09071.1|  641|Caenorhabditis elegans Hypothetical
           protein C36E6.1b protein.
          Length = 641

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 375 PQQVPAAALPPGYAYFAYQPPPTTYQ 452
           P Q+P    PPGY   A  PP   YQ
Sbjct: 461 PVQLPQVMAPPGYPTQAAYPPQAVYQ 486


>U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical
           protein B0222.1 protein.
          Length = 285

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 402 PPGYAYFAYQPPPTTYQYGVYPTYGGVRAGGP 497
           PPG+  F   PPP+   Y   P Y   +   P
Sbjct: 237 PPGFQGFQQGPPPSAPVYSAPPPYNNFQQNSP 268


>U46753-7|AAA85763.2|  223|Caenorhabditis elegans Hypothetical
           protein C34F11.8 protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 478 PPYVGYTPYWYVVGGGWYAKYAYPGG 401
           P Y GY+ Y    GGG+   Y Y GG
Sbjct: 164 PSYGGYSGYGGGYGGGYGGGYGYGGG 189


>Z74472-8|CAD54135.1|   75|Caenorhabditis elegans Hypothetical
           protein F23H12.8 protein.
          Length = 75

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 408 GYAYFAYQPPPTTYQYGVYPTYGGVRAGG 494
           GY Y  Y  P + Y YG Y  YG    GG
Sbjct: 27  GYGYGGYGYPSSYYGYGSYYGYGYPYYGG 55


>AF106574-2|AAM81088.1|  315|Caenorhabditis elegans Hypothetical
           protein E02D9.1b protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = +3

Query: 309 GARDGAFGLSAGDRFGRTDAASPQQVPAAALPPGYAYFAYQPPPTTYQYGVYPTYG 476
           G R G F  + G R G      PQ+   AA      Y  Y P      YG+YP  G
Sbjct: 7   GGRGGGFP-ARGGRGGGHGGGYPQEGYGAAAGGYGGYDPYNPYGAAGGYGMYPGQG 61



 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 279 HMGGYYEVGYGARDGAFG 332
           H GGY + GYGA  G +G
Sbjct: 23  HGGGYPQEGYGAAAGGYG 40


>AF106574-1|AAY44015.1|  317|Caenorhabditis elegans Hypothetical
           protein E02D9.1c protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = +3

Query: 309 GARDGAFGLSAGDRFGRTDAASPQQVPAAALPPGYAYFAYQPPPTTYQYGVYPTYG 476
           G R G F  + G R G      PQ+   AA      Y  Y P      YG+YP  G
Sbjct: 7   GGRGGGFP-ARGGRGGGHGGGYPQEGYGAAAGGYGGYDPYNPYGAAGGYGMYPGQG 61



 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 279 HMGGYYEVGYGARDGAFG 332
           H GGY + GYGA  G +G
Sbjct: 23  HGGGYPQEGYGAAAGGYG 40


>AC006611-4|AAK85456.2|  328|Caenorhabditis elegans Hypothetical
           protein C30F8.3 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +3

Query: 303 GYGARDGAFGLSAGDRFGRTDAASPQQVPAAALPPGYAY-FA----YQPPP 440
           G+G   G  G   G R G   AA+P  + +A +PP  AY FA     QPPP
Sbjct: 26  GFGGIFGGGG-GCGSRPGGCVAAAPAALYSAPVPPPPAYPFAPQVFTQPPP 75


>Z69903-1|CAA93772.1|  137|Caenorhabditis elegans Hypothetical
           protein F46F2.3 protein.
          Length = 137

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +3

Query: 273 PHHMGGYYEVGYGARDGAFGLSAGDRFGRTDAASPQ-QVPAAALPPGYAYFAYQPPPTTY 449
           P  +GG +    G  D      A     +  A  PQ Q PA    P Y   AYQP P+ Y
Sbjct: 21  PGGLGGLFGAPAGGCDPCAAARAPYYPPQQPAYQPQYQQPA--YQPHYQQPAYQPQPSAY 78

Query: 450 Q 452
           Q
Sbjct: 79  Q 79


>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical protein
            F11C1.5a protein.
          Length = 1804

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 285  GGYYEVGYGARDGAFGLSAGDRFGRTDAASPQQVP 389
            GGY   G G   G F L AG    +    + QQVP
Sbjct: 1473 GGYNTAGLGGIGGPFRLDAGHDVHQMPDFAKQQVP 1507


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
 Frame = +3

Query: 285 GGYYEVGYGARDGAF---GLSAGDRFGRTDAASP--QQVPAAALPPGYAYFA 425
           GGY   G G   GA    G +AG   G    A+P  Q  PA A P G  Y A
Sbjct: 358 GGYSGGGGGGGGGAAAGGGYNAGGGGGGAPQAAPAPQAAPAPAAPAGGGYNA 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.130    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,770,834
Number of Sequences: 27780
Number of extensions: 146343
Number of successful extensions: 664
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)