Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3736
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    27   0.59 
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    25   2.4  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   3.2  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   3.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   4.2  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    24   7.3  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    23   9.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    23   9.6  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   9.6  

>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 27.5 bits (58), Expect = 0.59
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 108 TRLRPVKPKTAPETNTIIEVP---TTVLPKEPKPPSASP 1
           T + P K  T  +  T I  P    T +P  P PP+A+P
Sbjct: 185 TNVTPKKTTTQIDVQTNIVTPPITVTAVPDSPNPPAATP 223


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 81 TAPETNTIIEVPTTVLPKEPKPP 13
          +A  T T++E PTT L    +PP
Sbjct: 2  SATATTTVVEPPTTTLTGATEPP 24


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -2

Query: 144  QLLEAIRNEKNRTRLRPVKPKTAPETNTIIEVPTTVLPKEPKPPSAS 4
            Q +   R  KNR         +    + ++  PT+  P  P PPS+S
Sbjct: 1204 QFVVNTRAGKNRKTNVSANNVSQGTDSRLVTKPTSTFPSPPSPPSSS 1250


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 166  STFRRQTTIVGSY*KRKKSHSSQTGQTKNGAR 71
            S+F +QTT   +  K+KK+HSS++ +  +  R
Sbjct: 1113 SSFAKQTTNKHANLKQKKTHSSKSDKKSSRRR 1144


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 69  TNTIIEVPTTVLPKEPKPPSAS 4
           T TII   TT++P  P  PS+S
Sbjct: 874 TTTIIGGTTTIIPVNPGNPSSS 895


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 126 RNEKNRTRLRPVKPKTAPETNTIIEVPTTVLPKEPKP 16
           + E  RT   P   + AP +   +  PT  LP++P P
Sbjct: 27  KREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPLP 63


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 8    ADGGLGSLGNTVVGTSIIVLVSGAVFGLTG 97
            A GGL   G T +G+     V+G   G+TG
Sbjct: 1228 AAGGLALAGVTTIGSVGSKAVTGVADGVTG 1257


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 96   PVKPKTAPETNTIIEVPTTVLPKEPKPPSASP 1
            PV+P++A         P       P PPSA P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 41  VVGTSIIVLVSGAVFGLTG-LRRVRFFSFLIAS 136
           ++G+S+  L+ GAV  LTG  +++   S+   S
Sbjct: 395 IIGSSLGSLLGGAVISLTGNYKKITVGSYFFGS 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 976,462
Number of Sequences: 5004
Number of extensions: 13646
Number of successful extensions: 54
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)