Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3736
(340 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X06290-1|CAA29618.1| 4548|Homo sapiens protein ( Human mRNA for ... 30 1.6
DQ452068-1|ABF47086.1| 2040|Homo sapiens lipoprotein, Lp(a) prot... 30 1.6
AL596089-1|CAH73590.1| 2040|Homo sapiens lipoprotein, Lp(a) prot... 30 1.6
AL109933-1|CAI22905.1| 2040|Homo sapiens lipoprotein, Lp(a) prot... 30 1.6
BX537864-1|CAD97867.1| 270|Homo sapiens hypothetical protein pr... 30 2.1
BC037404-1|AAH37404.1| 1015|Homo sapiens formin binding protein ... 30 2.1
AK022987-1|BAB14348.1| 560|Homo sapiens protein ( Homo sapiens ... 30 2.1
AB023231-1|BAA76858.2| 1050|Homo sapiens KIAA1014 protein protein. 30 2.1
BC030221-1|AAH30221.1| 1075|Homo sapiens ABI gene family, member... 28 6.4
BC014184-1|AAH14184.2| 393|Homo sapiens PSPC1 protein protein. 28 6.4
AL354808-5|CAI41005.1| 248|Homo sapiens paraspeckle component 1... 28 6.4
AL354808-4|CAI41004.1| 523|Homo sapiens paraspeckle component 1... 28 6.4
AF449627-1|AAL59602.1| 393|Homo sapiens paraspeckle protein 1 b... 28 6.4
AF448795-1|AAL59601.1| 523|Homo sapiens paraspeckle protein 1 a... 28 6.4
BC008744-1|AAH08744.2| 440|Homo sapiens PLEKHQ1 protein protein. 28 8.5
AF494534-1|AAM18053.1| 490|Homo sapiens PH domain containing pr... 28 8.5
>X06290-1|CAA29618.1| 4548|Homo sapiens protein ( Human mRNA for
apolipoprotein(a). ).
Length = 4548
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 114 NRTRLRPVKPKTAPETNTIIEVPTTVLPKEPKPPSASP 1
N TR PV + T T+ VP+T P E PP SP
Sbjct: 3969 NLTRC-PVTESSVLTTPTVAPVPSTEAPSEQAPPEKSP 4005
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 96 PVKPKTAPETNTIIEVPTTVLPKEPKPPSAS 4
PV T T T++ VP+T LP E P S
Sbjct: 3860 PVMESTLLTTPTVVPVPSTELPSEEAPTENS 3890
>DQ452068-1|ABF47086.1| 2040|Homo sapiens lipoprotein, Lp(a) protein.
Length = 2040
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 114 NRTRLRPVKPKTAPETNTIIEVPTTVLPKEPKPPSASP 1
N TR PV + T T+ VP+T P E PP SP
Sbjct: 1461 NLTRC-PVTESSVLTTPTVAPVPSTEAPSEQAPPEKSP 1497
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 96 PVKPKTAPETNTIIEVPTTVLPKEPKPPSAS 4
PV T T T++ VP+T LP E P S
Sbjct: 1352 PVMESTLLTTPTVVPVPSTELPSEEAPTENS 1382
>AL596089-1|CAH73590.1| 2040|Homo sapiens lipoprotein, Lp(a) protein.
Length = 2040
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 114 NRTRLRPVKPKTAPETNTIIEVPTTVLPKEPKPPSASP 1
N TR PV + T T+ VP+T P E PP SP
Sbjct: 1461 NLTRC-PVTESSVLTTPTVAPVPSTEAPSEQAPPEKSP 1497
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 96 PVKPKTAPETNTIIEVPTTVLPKEPKPPSAS 4
PV T T T++ VP+T LP E P S
Sbjct: 1352 PVMESTLLTTPTVVPVPSTELPSEEAPTENS 1382
>AL109933-1|CAI22905.1| 2040|Homo sapiens lipoprotein, Lp(a) protein.
Length = 2040
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 114 NRTRLRPVKPKTAPETNTIIEVPTTVLPKEPKPPSASP 1
N TR PV + T T+ VP+T P E PP SP
Sbjct: 1461 NLTRC-PVTESSVLTTPTVAPVPSTEAPSEQAPPEKSP 1497
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 96 PVKPKTAPETNTIIEVPTTVLPKEPKPPSAS 4
PV T T T++ VP+T LP E P S
Sbjct: 1352 PVMESTLLTTPTVVPVPSTELPSEEAPTENS 1382
>BX537864-1|CAD97867.1| 270|Homo sapiens hypothetical protein
protein.
Length = 270
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 102 LRPVKPKTAPETNTIIEVPTTVLPKEPKPPSA 7
L+PV+ + A T TIIE P P P PP A
Sbjct: 225 LQPVQARGAVPTATIIEPPPPPPPPPPPPPPA 256
>BC037404-1|AAH37404.1| 1015|Homo sapiens formin binding protein 4
protein.
Length = 1015
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 102 LRPVKPKTAPETNTIIEVPTTVLPKEPKPPSA 7
L+PV+ + A T TIIE P P P PP A
Sbjct: 886 LQPVQARGAVPTATIIEPPPPPPPPPPPPPPA 917
>AK022987-1|BAB14348.1| 560|Homo sapiens protein ( Homo sapiens
cDNA FLJ12925 fis, clone NT2RP2004710, highly similar to
Mus musculus formin binding protein 30 mRNA. ).
Length = 560
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 102 LRPVKPKTAPETNTIIEVPTTVLPKEPKPPSA 7
L+PV+ + A T TIIE P P P PP A
Sbjct: 431 LQPVQARGAVPTATIIEPPPPPPPPPPPPPPA 462
>AB023231-1|BAA76858.2| 1050|Homo sapiens KIAA1014 protein protein.
Length = 1050
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 102 LRPVKPKTAPETNTIIEVPTTVLPKEPKPPSA 7
L+PV+ + A T TIIE P P P PP A
Sbjct: 921 LQPVQARGAVPTATIIEPPPPPPPPPPPPPPA 952
>BC030221-1|AAH30221.1| 1075|Homo sapiens ABI gene family, member 3
(NESH) binding protein protein.
Length = 1075
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 111 RTRLRPVKPKTAPETNTIIEVPTTVLPKEPKPPSASP 1
+ R RP P+T PE T T + K P+P +P
Sbjct: 471 KRRPRPKPPRTKPERTTSAGTITPKISKSPEPTWTTP 507
>BC014184-1|AAH14184.2| 393|Homo sapiens PSPC1 protein protein.
Length = 393
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 138 LEAIRNEKNRTRLRPVKPKTAPETNTIIEVPTTVLPKEPKPPSASP 1
L+ +R EKN RLR ++ L EP PP+ +P
Sbjct: 7 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAP 52
>AL354808-5|CAI41005.1| 248|Homo sapiens paraspeckle component 1
protein.
Length = 248
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 138 LEAIRNEKNRTRLRPVKPKTAPETNTIIEVPTTVLPKEPKPPSASP 1
L+ +R EKN RLR ++ L EP PP+ +P
Sbjct: 7 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAP 52
>AL354808-4|CAI41004.1| 523|Homo sapiens paraspeckle component 1
protein.
Length = 523
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 138 LEAIRNEKNRTRLRPVKPKTAPETNTIIEVPTTVLPKEPKPPSASP 1
L+ +R EKN RLR ++ L EP PP+ +P
Sbjct: 7 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAP 52
>AF449627-1|AAL59602.1| 393|Homo sapiens paraspeckle protein 1 beta
isoform protein.
Length = 393
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 138 LEAIRNEKNRTRLRPVKPKTAPETNTIIEVPTTVLPKEPKPPSASP 1
L+ +R EKN RLR ++ L EP PP+ +P
Sbjct: 7 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAP 52
>AF448795-1|AAL59601.1| 523|Homo sapiens paraspeckle protein 1
alpha isoform protein.
Length = 523
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 138 LEAIRNEKNRTRLRPVKPKTAPETNTIIEVPTTVLPKEPKPPSASP 1
L+ +R EKN RLR ++ L EP PP+ +P
Sbjct: 7 LKQVRIEKNPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAP 52
>BC008744-1|AAH08744.2| 440|Homo sapiens PLEKHQ1 protein protein.
Length = 440
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 135 EAIRNEKNRTRLRPVKPKTAPETNTIIE-VPTTVLPKEPKPPSAS 4
EA E R + P KP APET + + V T V + P P SAS
Sbjct: 143 EAQPRETPRPLMPPTKPFLAPETTSPGDRVETPVGERAPTPVSAS 187
>AF494534-1|AAM18053.1| 490|Homo sapiens PH domain containing
protein protein.
Length = 490
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 135 EAIRNEKNRTRLRPVKPKTAPETNTIIE-VPTTVLPKEPKPPSAS 4
EA E R + P KP APET + + V T V + P P SAS
Sbjct: 193 EAQPRETPRPLMPPTKPFLAPETTSPGDRVETPVGERAPTPVSAS 237
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,749,746
Number of Sequences: 237096
Number of extensions: 469321
Number of successful extensions: 1889
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1889
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1852524224
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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