Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3734
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    28   1.0  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   1.3  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   1.3  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   4.1  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   4.1  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   5.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   5.4  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   5.4  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   7.1  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   9.4  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 135 RSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 314
           +S W   T   +  G   +S  +  + S     G  +     SPS+S+PS A+  S S+ 
Sbjct: 21  KSSWSKDTIAVQAVGSSPSSSSSHDFESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKY 80

Query: 315 THRHS 329
             + +
Sbjct: 81  VRKEA 85


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 61   SFSKYLQSASLRHFEKAARHENPLIVAAGNYIPDPVDRMVNRRRR 195
            SF  +L  A + ++  AA  +N + ++  N+I    +R++NRR +
Sbjct: 1253 SFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNRRTK 1297


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 231 NGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 356
           N + RH      SSS+ S + K STS+L    SP S  P  L
Sbjct: 14  NRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 180 KPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLS 338
           KPS    +R  G S ++  A    K    S S P +     T +++ +HSP+S
Sbjct: 24  KPSPPLPSRRKGKS-ALRSALE--KKNRKSKSKPKVTITSDTPKVSSQHSPVS 73


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -1

Query: 319 WVSSLVEPFVASDGFDEDGDRCLWCLK 239
           W      P VA D  DEDG   +W LK
Sbjct: 898 WEPRWFVPSVAGDDEDEDGSGPIWQLK 924


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +3

Query: 135 RSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTS 308
           ++R  LH +  R  GKP       +YG    I   +   +   P  ++P+ +   +TS
Sbjct: 66  KTRKHLHVKVRRDRGKPLIEEPEENYGIKDRIPVYYEEEELPEPHVTSPTKSEFATTS 123


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 199 KHVITDPPDPLTVLLGTTSTGH 264
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 228 INGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSP 347
           +NG  +HH +R  +SS   L++ GS +E +  H P +  P
Sbjct: 664 VNGNSQHHHNRDDASS--GLSSNGSENE-SLEHEPTNELP 700


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 162 PSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSF 341
           PS  +   +TSP +    SS S + +       S SSS+ S ++  S+S  +   S  S 
Sbjct: 144 PSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 203

Query: 342 S 344
           S
Sbjct: 204 S 204



 Score = 25.0 bits (52), Expect = 7.1
 Identities = 23/77 (29%), Positives = 32/77 (41%)
 Frame = +3

Query: 114 TT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLAT 293
           TT  PS  S     +  S  +   S+S  +    SS S + +       S SSS+ S+  
Sbjct: 151 TTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPI 210

Query: 294 KGSTSELTHRHSPLSFS 344
             STS  +H  S  S S
Sbjct: 211 TSSTSS-SHSSSSSSSS 226


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +3

Query: 162 PSRPNGKPSTSPKARHYGSS*SINGAFRHHK--HRSPSSSNPSLATKGSTSE 311
           PS PNGK + SP A       S+N   +         SSSN SL ++   S+
Sbjct: 43  PSTPNGKEAASPSALKQNVRPSLNSVQQTPASIDAVASSSNVSLQSQQPLSK 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,571
Number of Sequences: 5004
Number of extensions: 37550
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)