Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3734
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 29 1.8
07_01_0567 - 4214196-4214351,4214539-4214845,4215005-4215069,421... 29 1.8
06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152... 29 2.4
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119... 29 2.4
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 29 3.1
03_06_0233 + 32530174-32530492,32531081-32531127,32531277-325314... 29 3.1
02_02_0537 + 11308195-11309667 29 3.1
01_05_0645 - 23899579-23904483 29 3.1
10_08_0898 + 21424379-21424792,21424974-21425723 28 4.1
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 28 4.1
01_01_0060 + 477667-477816,479312-479722 28 4.1
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 27 7.2
05_06_0151 - 25999366-26000044,26004820-26005637 27 7.2
01_06_1050 + 34125087-34126001,34126082-34126639 27 7.2
12_01_0610 + 5030130-5030247,5030957-5033193 27 9.5
12_01_0117 + 893924-893971,894944-895003,895024-895174,895410-89... 27 9.5
>11_01_0110 +
850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +3
Query: 126 PSHRSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRS 263
P H + + RP RPNG P A GS I +HRS
Sbjct: 59 PRHSAAFSRSLRPCRPNGPPPAFASAEFPGSVPDIAQMPPRRRHRS 104
>07_01_0567 -
4214196-4214351,4214539-4214845,4215005-4215069,
4215406-4215471,4215594-4215639,4215671-4216200
Length = 389
Score = 29.5 bits (63), Expect = 1.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 58 DSFSKYLQSASLRHFEKAARHENPL 132
D+F +Y+ + SLR+F HE P+
Sbjct: 167 DTFDRYVSAGSLRYFLNCVSHEQPM 191
>06_01_0196 +
1520015-1520191,1520483-1520527,1521851-1521910,
1522246-1522358,1522432-1522642,1523087-1523133,
1523211-1523369,1523521-1523624,1524300-1524634
Length = 416
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 286 SDGFDEDGDRCLWCLKAP 233
SDGFDE D C CL+ P
Sbjct: 282 SDGFDEGADACAVCLERP 299
>03_03_0042 +
14009649-14009866,14011342-14011419,14011791-14011955,
14012071-14012138,14012219-14012258,14013579-14013690,
14013859-14013942
Length = 254
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 186 STSPKARHYGSS*SINGAFRHHK-HRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 356
S SP++R++ S S + A R ++ HR S SL+ G HR + S SPD L
Sbjct: 168 SRSPRSRYHSYSPSPSPARRDYRDHRDDYSPGESLSPHGQDKR-HHRSNGRSASPDEL 224
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +3
Query: 186 STSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 356
ST P + +IN + H PSSS T T + H H P SF P +
Sbjct: 973 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYI 1028
>03_06_0233 +
32530174-32530492,32531081-32531127,32531277-32531413,
32531673-32531841,32532598-32532885,32533021-32533107,
32533454-32534152,32534244-32534735
Length = 745
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 153 HTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTS 308
H+ NG PS+ K R GSS ++ +F+ ++ S N +L++ +T+
Sbjct: 519 HSLDPELNGSPSSKDKLRKDGSSKLLSHSFKDLGNKDIRSDNVALSSVAATT 570
>02_02_0537 + 11308195-11309667
Length = 490
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +3
Query: 186 STSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 356
ST P + +IN + H PSSS T T + H H P SF P +
Sbjct: 131 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYI 186
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +3
Query: 186 STSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 356
ST P + +IN + H PSSS T T + H H P SF P +
Sbjct: 1250 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYI 1305
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 246 HHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPD 350
HH H PS AT +TS H+ S LSF+ D
Sbjct: 101 HHHHHIGGMGEPSGATPSATSS-DHQTSMLSFADD 134
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = +3
Query: 156 TRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSS---NPSLATKGSTSELTHRH 326
T P P+ PS+ P RH S + G R + SPS S PS + S S T
Sbjct: 5 TAPPPPSSPPSSPPPLRH---SPAALGTPRSRRRHSPSPSLALTPSSSASASASASTSSR 61
Query: 327 SPLSFSP 347
+ SP
Sbjct: 62 PKVRPSP 68
>01_01_0060 + 477667-477816,479312-479722
Length = 186
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 243 RHHKHRS-PSSSNPSLATKGSTSELTHRHSPLSFSPDL 353
RHH H S SSS+P +TK + ++L H ++ L
Sbjct: 32 RHHHHYSTSSSSSPPSSTKEAVTQLDHLEQAAAYIKQL 69
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +3
Query: 123 EPSHRSRWKLHTRPSR-PNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPS 284
EPS R R + + R P P + HY + G HH+ +PS + S
Sbjct: 282 EPSPRDRGRHYDNRDRSPYISPRHRMRPSHYRDNTPSRGEMHHHRDNTPSRVDSS 336
>05_06_0151 - 25999366-26000044,26004820-26005637
Length = 498
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 280 GFDEDGDRCLWCLKAPLMDQEDP 212
G ++ G R LW ++AP++ DP
Sbjct: 315 GLEKSGHRFLWVVRAPIVVNNDP 337
>01_06_1050 + 34125087-34126001,34126082-34126639
Length = 490
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 319 WVSSLVEPFVASDGFDEDGDRCLWCLKA 236
+V S++E F+ F+ DGD+ LW KA
Sbjct: 113 YVVSVMEDFLGHGIFNSDGDQWLWQRKA 140
>12_01_0610 + 5030130-5030247,5030957-5033193
Length = 784
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +1
Query: 49 LELDSFSKYLQSASLRHFEKAARH---ENPLIV 138
LE DS+++Y ++ RH + AA + ENP+++
Sbjct: 300 LEYDSYARYCKNVVQRHIQVAASNTQMENPVVL 332
>12_01_0117 +
893924-893971,894944-895003,895024-895174,895410-895884,
895974-896316,896347-896391,896533-896631,896708-896828,
897032-897255
Length = 521
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 114 TT*EPSHRSRWKLHTRPSRPNGKPSTSPKARHYGS 218
+T P H + + RP RPNG P A GS
Sbjct: 54 STPHPLHSTAFSHSLRPRRPNGPPPAFASAEFPGS 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,888,238
Number of Sequences: 37544
Number of extensions: 300777
Number of successful extensions: 802
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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