Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3734
         (535 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.          31   2.6  
BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni...    31   2.6  
AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte...    31   2.6  
AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto...    31   2.6  
AK091703-1|BAC03727.1|  571|Homo sapiens protein ( Homo sapiens ...    30   5.9  

>Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.
          Length = 1566

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 177  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 311
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103


>BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1
            protein.
          Length = 1581

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 177  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 311
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118


>AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D
            receptor-interacting protein complex component DRIP205
            protein.
          Length = 1566

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 177  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 311
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103


>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
            receptor-associated protein complex component TRAP220
            protein.
          Length = 1581

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 177  GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 311
            GKPS+  +    GS  S +G+  HH H S SSS+ S + K  +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118


>AK091703-1|BAC03727.1|  571|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34384 fis, clone HCHON1000131, weakly similar to
           KES1 PROTEIN. ).
          Length = 571

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 156 TRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPL 335
           T PS  N  P+T P+  +  S   +  A   H+  S SS    + + GS S LTH  S  
Sbjct: 106 TSPSHVNLSPNTVPEFSYSSSEDELYDADEFHQ--SGSSPKRLIDSSGSASVLTHSSSGN 163

Query: 336 SFS-PD 350
           S   PD
Sbjct: 164 SLKRPD 169


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,675,431
Number of Sequences: 237096
Number of extensions: 1520347
Number of successful extensions: 7688
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7680
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)